Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73660 455 / 1e-145 protein tyrosine kinase family protein (.1) AT1G18160 450 / 4e-144 Protein kinase superfamily protein (.1) AT1G08720 410 / 2e-129 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G11850 405 / 6e-128 Protein kinase superfamily protein (.1) AT5G49470 322 / 4e-101 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT5G03730 330 / 3e-100 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT1G67890 312 / 3e-94 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06620 311 / 1e-93 PAS domain-containing protein tyrosine kinase family protein (.1) AT4G24480 310 / 7e-92 Protein kinase superfamily protein (.1) AT3G06640 302 / 9e-91 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009062 [exp] 1294 / 0 AT1G73660 673 / 0.0 protein tyrosine kinase family protein (.1) Lus10038955 [exp] 542 / 2e-179 AT1G18160 978 / 0.0 Protein kinase superfamily protein (.1) Lus10027247 [exp] 525 / 8e-173 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10004124 [exp] 414 / 3e-131 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 412 / 3e-131 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10023865 [exp] 332 / 9e-101 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 332 / 1e-100 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10016912 [exp] 318 / 1e-96 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 316 / 3e-95 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040100 [exp] 481 / 4e-155 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 471 / 2e-151 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.005G047600 [exp] 412 / 4e-130 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 407 / 5e-128 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 398 / 1e-124 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 397 / 2e-124 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.016G095750 [exp] 329 / 1e-99 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.005G153100 [exp] 330 / 5e-99 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1) Potri.002G111200 [exp] 329 / 8e-99 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.008G105100 [exp] 322 / 6e-98 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10031341 pacid=23151062 polypeptide=Lus10031341 locus=Lus10031341.g ID=Lus10031341.BGIv1.0 annot-version=v1.0 ATGCCAAATCGTATGAGAAATCTGTTCAAGAAGCTTCATGCTAGTAATACTAATTCCAGTCAACATGAAGATGCATCAGAAGGGTCAACAACTACTTCAT CATCAAGAGGAAGTAAGCTAACTGATGTTTCATCATCCGTTTCAGACCACAAACCGTTTTCGGGTATTTCGAATTGGTTGAACTCAGTTACCAGTAGTAG TAGGAAGAGCCCTAGTCCACCTTCCTCTTCGAATGTACCCCGAGGTTCGGAGAGGATAGTAGTGAAACCATCCGATTCAGTTTCGGATGTCGCTGCATCG AATTCTGTGGCGGTGGTTCGAGATTCGGGAGGTCCTGAGATTGATGAGGAGTACCAGATACAATTGGCCTTGGAGATGAGTGCCATTGAGGATCCTGAGG CTGCTCAGATTGAGGCCGTCAAGCAAATTAGTTTGGGGTCTTCTCACCCTGAGAATTCTCCTGCTGAGGTTCTTGCTTATCGTTACTGGAATTACAATGC TCTAAGCTACGACGACAAGATCTTGGATGGTTTTTACGACTTGTACGGAGTACTGACCGATTCGCAGTCAGACAAAATGCCCTCTTTGCTTGAGCTGCAA GGAACTCCGGTCTCGGAGAGTAGTATGTGGGAGGCAGTTCTTGTTGACAGGACTGCCGATGCGAATCTGCTTAAGCTCGAGCAGAAGGCACGAGAAATCG CCATTGAGCTAAGAACGGAGTCTCCAGCTTTCAAAGACTCCAATTTGGTCAAGAGGCTAGCTACCTTGGTTTCTAACTACATGGGGGGATCAGTTGGAGA CCCTGAGAACATGTCGAGAGCTTGGAAACGTCTTAGCTACAGCTTGAAAGCCACCCTCGGTAGCATGGTTCTGCCGTTAGGGTCGCTAACGATCGGAATG GCGCGTCATCGAGCATTGATGTTCAAGGTTTTCGCTGATAGTGTGGGCATACCTAGCCGGTTGGTGAAAGGACACCAGTTCACTGGTTCTGATGATGTGG TCATGAACTTCGTGAAACTCGACGATGGAAGGGAGTACATTATTGATCTGATGGCAGATCCCGGGACTCTAATTCCTTCGGACGCAGCCGGATTAAACAT GATGAACGATAACTTTTGCTTCTCGGCCAGCTCTCTGTCTCACCTAGCCTCTTCTAGTAGTGGAGCGGCAAGTTCATTGGCAGAGATTCCGGATTCGGTC AACTTAAGATTCCCCATTCGAGGCAATGTAGAATCCAGGAGCTCCCCCGACGAGCGCAGGCAAAACTATCCTTACGCACACGCGAGGTCGCCTTCATGGA CTGAAGGAATAACCCCTGCCGCACGTAAGAAGAAAGTGAAAGACGTCTCGCGATACATGATCGATGCCGCCAAGGAGAATCCTCAACTGGCTCAGAAGCT TCACGATGTGCTGCTAGAGAGTGGTGTCAACGCTCCGCCTAGCTTGTTTACCGAGTTTGAGCAGTTGAGTCTTCCATCTACGGAAACTGAGCCTGGGAAA GAGAAGGACGATCTTCTTTCTAAGCCGCCTCGATTCTTACCACCTCTGCCTCAGCTTCAGTCCGAAGCAACTCCTCCAACTTATCTTGATAGCAGCTCGA AGGCGGATCATTTCACGCTAGACGATGTTGCAGAGTGTGAGATTCCGTGGGAAGAAATCACCCTGGGTGAACGCATTGGACTCGGGTCGTACGGTGAAGT CTACCACGGAGAATGGCATGGAACTGAAGTTGCTGTGAAGAAGTTCCTAGTTCAGGATATTTCCGGGGAATTGTTAGCGGAGATCAAAAGCGAGGTTCAG ATCATGAAGCGGCTTAGACATCCAAATGTGGTTCTATTCATGGGAGCAGTGACACGTTCCCCAAATCTTTCGATTGTCACGGAGTTTCTTCCTAGAGGTA GCTTGTACAGATTACTTCACCGGCCGAACAATCAACTCGACGAGAGAAGGCGATTGAGGATGGCGCTCGATGCAGCTAGGGGAATGAACTATCTACACAG CTCTACGCCAGTGATCGTACATCGTGATTTGAAGTCTCCTAATCTCTTAGTTGATAAAAACTGGGTTGTGAAGGTTTGTGATTTTGGTCTATCGAGAATG AAGCACAGCACATTCCTCTCGTCAAAGTCGACTGCAGGAACAGCCGAGTGGATGGCACCAGAAGTGCTAAGAAATGAACCTTCAGATGAAAAATGTGATG TCTACAGCTATGGAGTCATACTTTGGGAGCTCTGTACATTGCGGCAACCGTGGGGAGGGATGAACCCAATGCAGGTAGTTGGGGCCGTAGGGTTCCAGCA CCGGCGACTAGACATCCCTGCCGATATGGATCCTGCCATTGCTGACATCATTCGGAGCTGCTGGCAAACAGATCCTAGAATGAGGCCATCGTTCGCAGAG ATCATGGCGGCTTTGAAGCCACTGCAGAAGCCGGCCACTACACAGGCAGCTAGACATAATACGCGAGGAGTCGAGAAAGGTCGACTGACAGCAGAAGATC AGGCAAGGTGA
AA sequence Show only first row Show all	>Lus10031341 pacid=23151062 polypeptide=Lus10031341 locus=Lus10031341.g ID=Lus10031341.BGIv1.0 annot-version=v1.0 MPNRMRNLFKKLHASNTNSSQHEDASEGSTTTSSSRGSKLTDVSSSVSDHKPFSGISNWLNSVTSSSRKSPSPPSSSNVPRGSERIVVKPSDSVSDVAAS NSVAVVRDSGGPEIDEEYQIQLALEMSAIEDPEAAQIEAVKQISLGSSHPENSPAEVLAYRYWNYNALSYDDKILDGFYDLYGVLTDSQSDKMPSLLELQ GTPVSESSMWEAVLVDRTADANLLKLEQKAREIAIELRTESPAFKDSNLVKRLATLVSNYMGGSVGDPENMSRAWKRLSYSLKATLGSMVLPLGSLTIGM ARHRALMFKVFADSVGIPSRLVKGHQFTGSDDVVMNFVKLDDGREYIIDLMADPGTLIPSDAAGLNMMNDNFCFSASSLSHLASSSSGAASSLAEIPDSV NLRFPIRGNVESRSSPDERRQNYPYAHARSPSWTEGITPAARKKKVKDVSRYMIDAAKENPQLAQKLHDVLLESGVNAPPSLFTEFEQLSLPSTETEPGK EKDDLLSKPPRFLPPLPQLQSEATPPTYLDSSSKADHFTLDDVAECEIPWEEITLGERIGLGSYGEVYHGEWHGTEVAVKKFLVQDISGELLAEIKSEVQ IMKRLRHPNVVLFMGAVTRSPNLSIVTEFLPRGSLYRLLHRPNNQLDERRRLRMALDAARGMNYLHSSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRM KHSTFLSSKSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELCTLRQPWGGMNPMQVVGAVGFQHRRLDIPADMDPAIADIIRSCWQTDPRMRPSFAE IMAALKPLQKPATTQAARHNTRGVEKGRLTAEDQAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73660			protein tyrosine kinase family...		Lus10031341 [exp]	0	1
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031289 [exp]	1.7	0.8809
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10029110 [exp]	2.0	0.8966
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	4.6	0.8441
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10030435 [exp]	5.2	0.8428
AT1G67890			PAS domain-containing protein ...		Lus10016912 [exp]	5.5	0.8816
AT2G42490			Copper amine oxidase family pr...		Lus10004618 [exp]	5.5	0.8472
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	5.7	0.8437
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	8.0	0.8259
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10017762 [exp]	15.0	0.8700
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	15.2	0.8381

Compare expression of checked genes

Lus10031341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.