Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73650 407 / 5e-144 Protein of unknown function (DUF1295) (.1), Protein of unknown function (DUF1295) (.2), Protein of unknown function (DUF1295) (.3), Protein of unknown function (DUF1295) (.4) AT1G18180 400 / 3e-141 Protein of unknown function (DUF1295) (.1) AT2G46890 62 / 8e-11 Protein of unknown function (DUF1295) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009061 [exp] 524 / 0 AT1G18180 436 / 2e-155 Protein of unknown function (DUF1295) (.1) Lus10009861 [exp] 59 / 1e-09 AT2G46890 456 / 2e-162 Protein of unknown function (DUF1295) (.1) Lus10010291 [exp] 56 / 1e-08 AT2G46890 425 / 3e-150 Protein of unknown function (DUF1295) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G039900 [exp] 430 / 3e-153 AT1G18180 405 / 4e-143 Protein of unknown function (DUF1295) (.1) Potri.014G109200 [exp] 62 / 9e-11 AT2G46890 456 / 1e-162 Protein of unknown function (DUF1295) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF06966 [flax] [poplar] DUF1295 Protein of unknown function (DUF1295)
Representative CDS sequence Show only first row Show all	>Lus10031343 pacid=23151097 polypeptide=Lus10031343 locus=Lus10031343.g ID=Lus10031343.BGIv1.0 annot-version=v1.0 ATGGGAACCGTCCTGGATTCTCATTTCCTTGCTCTTACCGCCATCGTTACTGTTTGTTATCAGCTGCTGTTCTTCATTGTCACAGCTCTTCTCAAGTTCG ATAAAGTCACTGACTTTGCCGGAAGCACGAATTTCATCCTGATTGCTGTGCTGACCATCATTCTTAAAGGAACATGGTACTTCAGACAGGTAGTTTTGAC TGTTCTTGTAGTCATATGGGGCCTCCGTCTTGCCGTGTTTCTACTTATGAGGATATTGCAGTGGGGGGAGGACAGGCGATTCGACGAAATGCGGAGCAAT TTGGGGAAGCTAGCCGTTTTCTGGACATTCCAGGCTATCTGGGTCTGGACAGTGAGCTTACCAGTGACAGTGGTGAATTCAAGTGACAGAAATCCAGGGT TCGAGATTCGAGACGTAATCGGGTGGATCATGTGGTCGATTGGCGCTTCGTTCGAAGCCACAGCTGATCAGCAGAAGCTGGCTTTTAAGAACTCCCCCGA GAATCGTGGGAAATGGTGCAATGTAGGCGTCTGGAAGTACACTCGCCACCCCAACTATTTCGGAGAGATTTTCCTATGGTGGGGAATCTTTGTAGCGTCT GCGCCAGTGCTCAAAGGTGCTGAATGGCTAGTAATCCTGGGACCAATCTTCCTGACATTGCTGCTCCTCTTCCTCAGCGGCATACCACTTCTCGAGGATT CTGCTGACAAGAAGTATGGCAATGTAGCTGCATACAGAATATACAAAAGGAGGACAAGCCCTCTAATCCCGCTGCCTCCATCGGTGTACGAGAACCTGCC ATCGTGGTTCAAATCAGTGTTTCTGTTTGAGCTCCCCTTGTACAGCCGTAGCCTTCCTCCTGAAGGTTTAATATGGTGA
AA sequence Show only first row Show all	>Lus10031343 pacid=23151097 polypeptide=Lus10031343 locus=Lus10031343.g ID=Lus10031343.BGIv1.0 annot-version=v1.0 MGTVLDSHFLALTAIVTVCYQLLFFIVTALLKFDKVTDFAGSTNFILIAVLTIILKGTWYFRQVVLTVLVVIWGLRLAVFLLMRILQWGEDRRFDEMRSN LGKLAVFWTFQAIWVWTVSLPVTVVNSSDRNPGFEIRDVIGWIMWSIGASFEATADQQKLAFKNSPENRGKWCNVGVWKYTRHPNYFGEIFLWWGIFVAS APVLKGAEWLVILGPIFLTLLLLFLSGIPLLEDSADKKYGNVAAYRIYKRRTSPLIPLPPSVYENLPSWFKSVFLFELPLYSRSLPPEGLIW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73650			Protein of unknown function (D...		Lus10031343 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10017583 [exp]	2.8	0.8431
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10043440 [exp]	3.6	0.7995
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	3.6	0.8476
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030837 [exp]	6.9	0.7974
AT5G36230			ARM repeat superfamily protein...		Lus10029667 [exp]	7.9	0.7930
					Lus10007581 [exp]	8.8	0.8391
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10028039 [exp]	11.4	0.7759
AT4G28230			unknown protein		Lus10033724 [exp]	13.4	0.8142
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10030547 [exp]	13.4	0.8381
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	15.8	0.8361

Compare expression of checked genes

Lus10031343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.