Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18190 241 / 2e-70 GC2 golgin candidate 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009060 [exp] 695 / 0 AT1G18190 499 / 5e-169 golgin candidate 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G039800 [exp] 285 / 2e-86 AT1G18190 509 / 1e-172 golgin candidate 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031344 pacid=23150965 polypeptide=Lus10031344 locus=Lus10031344.g ID=Lus10031344.BGIv1.0 annot-version=v1.0 ATGGCGATGAACTCTGAGTCCCGGCTTGCCTTATCACGTCGTTCTAACTCCGATATGATCAATTCAAACATCTCAGTAGTTCGATTCAGTGCTTTCGAAC TCTACTTAGCGCCTTTCTTTTGCCTCATTCAACCTCTTTTAGCAACCTCATTCAGTAAGTCCGATCTCTACTCGGTGCGCTTTCGTAACCCGGTCGTATC GGTCGCATTTATAACGAAGACGTCAGGGGAACAGATTAGTTTGCTCGAAATGGGCACAGCTTCATTGAATGGAGAAAAGCAATGTCGAACTGGATCTCCT CCAAGCTCAGAGTCGCCGAAACCTTCTTCGAGCAGGCAATTTCTCTCCACGATTGATCAGCAAGCGGCGGAGTCGTTGAAGAAGAACGAAGGGACGAGAT CTGAGGATCTGAAGCTTGACGTCCGTGGGAAAGGAGGAGGCTCCGTGCCGTTGAAGGATCAGCTGAGGAAGAAGAAGTCGTCCTCGTCGTTGTCGTTGTC TCCTGAAGGCGGCGATGTTAGGGATGAAATGATCGGGAAACGGAGTGCGGATCCTGTGGCTGGGAGCAGTATTGGGGTTCGGGAGAGCGATGGAGATAAG GAGAAGGATGTTTTGATATCGGGAAAAGCTAAGCCTACTATGACTGATAGTGATTGGACTGCGCTTCTAGGTAGTCCTAGTCCGCCTTCTACTTCTACTT CTTCGAATCGAAGTGGAGGAGTTGCTGGGATTCGTGGTCTGAGGAAGGATTTTAGGAGGCAGGTGAGCAGTGAAGGGAAGAGGAATTTGAAAGCTAGTAA TGTAGAAAGTGGTGTAAGGTCGAACAGGAGGCCGGATGCTGTATTGGCGAATAATATTGTTGTGAAACCAAGCGATGGAGATGAATCTCCATCTAGCTCG TCTGCTAGGTCTTCAAATGTCGAATTGCAGAGTGATGTGAAGGGTTTTCGCAGGCAGGAGGTGGAGAGAAAGGAGGTTCAGTCTGGGGAGATTGCTGCTG TTGCAGTTTCAAATGTAGAGGGGAGGGATCGAAACTTGGATATGTCGCCAGTGTCTGATGTGAAGAAGGGAGCAAGTGGTGTTTATGATCGATTGAGAAG TACGGTAAAGGGTAAACGTAAGGCTGTAGTGGGGTCGAAAAGCTTGGTGTCTGATGATGTGAAAAGAGGCTCTTCTTACTCGAGTGAAGGGGAATCTGAT TCGGGAAGTGAGTCTGATTCGGGAAGTGAGACTGATTCTGAGGATGAACGAGAAAGGGAGAGGAGGGAGAAGATATTAGCTGAGAAAGCAATAGCAAAAG CTGCAGAGGCGGTTAAAGAGCGCGAGAACTATGTTGCTAGATTGGAAGGAGAGAAGCAGAGTTTGGAGAAGATACTTGAAGAGCGGGCAAAGCAAGCAGC TGACGAGGCTTCAGAGCTTCAAACAACTATGATGGAGACTATGGAAGCTGCTGATGTGGAACACGAGAAACATAAGAACACTAGAATGGAAGCCATTGGT CGATTGGCTAAATTGGAGACTGCGAATGCTGATCTTTCAAGGTCTCTAGCTACAGTCCAGAAGAATCTTGAGATAGAGATTAATCGAGTGGCAGAACTGA AACGAGAAGTCGAGTTGAAAGAAGTAGCAGTTGAAGAGTTCAGGTGGAAGATTTCCGGGACTCAGCAGGCAGGAGCCCAGATCAACCAATCGGGCACTTC AAAAGGGGTAGAATTTGAACGAGAAATTCTCAAGGCCGAGTGCTCTTTCCTAGCTGATAAAATTGGAAGACTGGCGGAAAAGGCAAAGAAGTTGGAAGCA GACATTGAAGTGACGAGAAAAGGCCTGGAAGAACCAACAGAAGTAGAAGTTGAGCTAAAGCGAAGGCTCGGACAGTTGACTGATCATTTAATCCAGAAAC AAGCCCAGTCTGGTACGGCGCCGGAGGAAAGATCCGGTGCTGTCATTTCCCTGGAGAATATCAACAACACTGGCGCTGTATAG
AA sequence Show only first row Show all	>Lus10031344 pacid=23150965 polypeptide=Lus10031344 locus=Lus10031344.g ID=Lus10031344.BGIv1.0 annot-version=v1.0 MAMNSESRLALSRRSNSDMINSNISVVRFSAFELYLAPFFCLIQPLLATSFSKSDLYSVRFRNPVVSVAFITKTSGEQISLLEMGTASLNGEKQCRTGSP PSSESPKPSSSRQFLSTIDQQAAESLKKNEGTRSEDLKLDVRGKGGGSVPLKDQLRKKKSSSSLSLSPEGGDVRDEMIGKRSADPVAGSSIGVRESDGDK EKDVLISGKAKPTMTDSDWTALLGSPSPPSTSTSSNRSGGVAGIRGLRKDFRRQVSSEGKRNLKASNVESGVRSNRRPDAVLANNIVVKPSDGDESPSSS SARSSNVELQSDVKGFRRQEVERKEVQSGEIAAVAVSNVEGRDRNLDMSPVSDVKKGASGVYDRLRSTVKGKRKAVVGSKSLVSDDVKRGSSYSSEGESD SGSESDSGSETDSEDERERERREKILAEKAIAKAAEAVKERENYVARLEGEKQSLEKILEERAKQAADEASELQTTMMETMEAADVEHEKHKNTRMEAIG RLAKLETANADLSRSLATVQKNLEIEINRVAELKREVELKEVAVEEFRWKISGTQQAGAQINQSGTSKGVEFEREILKAECSFLADKIGRLAEKAKKLEA DIEVTRKGLEEPTEVEVELKRRLGQLTDHLIQKQAQSGTAPEERSGAVISLENINNTGAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10031344 [exp]	0	1
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	2.0	0.9067
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10005977 [exp]	2.4	0.8796
AT5G19900			PRLI-interacting factor, putat...		Lus10000691 [exp]	2.4	0.8973
AT1G02070			unknown protein		Lus10009267 [exp]	3.0	0.8934
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10030137 [exp]	3.7	0.8772
AT1G29690		CAD1	constitutively activated cell ...		Lus10025235 [exp]	4.0	0.8866
AT4G21215			unknown protein		Lus10018373 [exp]	7.7	0.8508
AT2G20740			Tetraspanin family protein (.1...		Lus10018584 [exp]	11.6	0.8825
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004880 [exp]	11.9	0.8041
AT1G11050			Protein kinase superfamily pro...		Lus10001295 [exp]	12.0	0.8563

Compare expression of checked genes

Lus10031344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.