Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18210 190 / 2e-62 Calcium-binding EF-hand family protein (.1.2) AT1G73630 188 / 1e-61 EF hand calcium-binding protein family (.1) AT1G66400 144 / 1e-44 CML23 calmodulin like 23 (.1) AT5G37770 136 / 3e-41 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G24620 127 / 2e-37 EF hand calcium-binding protein family (.1) AT2G15680 119 / 4e-34 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT5G21274 113 / 3e-32 ACAM-6, CAM6 calmodulin 6 (.1) AT2G41110 112 / 5e-32 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 112 / 5e-32 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 112 / 5e-32 ACAM-3, CAM3 calmodulin 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009059 [exp] 285 / 7e-100 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10018012 [exp] 220 / 4e-74 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10027081 [exp] 189 / 9e-62 AT1G18210 131 / 2e-39 Calcium-binding EF-hand family protein (.1.2) Lus10042008 [exp] 147 / 7e-46 AT1G18210 138 / 1e-42 Calcium-binding EF-hand family protein (.1.2) Lus10009127 [exp] 140 / 3e-41 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10014050 [exp] 122 / 2e-35 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10028913 [exp] 121 / 2e-35 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10004330 [exp] 121 / 2e-35 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10019863 [exp] 118 / 1e-33 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048200 [exp] 199 / 3e-66 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.015G039500 [exp] 193 / 2e-63 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.017G126200 [exp] 143 / 5e-44 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.004G089400 [exp] 142 / 1e-43 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.008G134300 [exp] 128 / 8e-38 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.010G107100 [exp] 128 / 1e-37 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.009G102500 [exp] 121 / 4e-35 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Potri.015G032600 [exp] 115 / 3e-33 AT5G37780 284 / 3e-100 TOUCH 1, calmodulin 1 (.1.2.3) Potri.002G239100 [exp] 114 / 7e-33 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.012G041000 [exp] 114 / 7e-33 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10031345 pacid=23151016 polypeptide=Lus10031345 locus=Lus10031345.g ID=Lus10031345.BGIv1.0 annot-version=v1.0 ATGGCGGAATCAGTACTGGCCGACGCAGCAACCACCCCAACCGCCACCGCGGCGGCCGAAGCAGCAGCCTACCTCCAGAACATGGAAGAGCTGAAGAAGG TGTTCTCCAAGTTCGACGCGAACGGCGACGGCAAGATCTCGCTCGCGGAGCTGGCGGACGTCCTCAGATCCATGGGATCCAGCTACTCTCCTCTCGACCT GCAGCGCGCCATGGACGACATCGACACCGACAAGGACGGCTTCATCAACTTGGAGGAGTTCGCCGAGCTCTGCCGCTCGTCTTCCGGAGCGTCCGCGGCG GCGGAGCTTCACGAGGCGTTTAATCTGTATGATGAGGATAAGGACGGGCTGATATCCAGCTCGGAGCTCCACCACGTGCTGAATCGGCTGGGGATGAAGT GCTCGATGGAGGAGTGCGGGAGGATGATTCAGGGAGTTGATTCTGACGGAGACGGCTGCGTCAATTTCGCTGAGTTTGAGAAGATGATGGCGGCCAACAG TGAAGCTACTGCTCCGGCGGTGAATTAG
AA sequence Show only first row Show all	>Lus10031345 pacid=23151016 polypeptide=Lus10031345 locus=Lus10031345.g ID=Lus10031345.BGIv1.0 annot-version=v1.0 MAESVLADAATTPTATAAAEAAAYLQNMEELKKVFSKFDANGDGKISLAELADVLRSMGSSYSPLDLQRAMDDIDTDKDGFINLEEFAELCRSSSGASAA AELHEAFNLYDEDKDGLISSSELHHVLNRLGMKCSMEECGRMIQGVDSDGDGCVNFAEFEKMMAANSEATAPAVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18210			Calcium-binding EF-hand family...		Lus10031345 [exp]	0	1
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	2.4	0.9424
AT1G18210			Calcium-binding EF-hand family...		Lus10009059 [exp]	2.6	0.9175
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10007493 [exp]	4.2	0.9303
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10017554 [exp]	5.3	0.9402
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10024314 [exp]	5.5	0.8925
AT5G35735			Auxin-responsive family protei...		Lus10012350 [exp]	6.9	0.8912
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10028970 [exp]	8.0	0.9267
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10013151 [exp]	8.5	0.9151
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10012196 [exp]	9.6	0.8751
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10008129 [exp]	10.1	0.8871

Compare expression of checked genes

Lus10031345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.