Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01860 378 / 7e-129 EMB975 EMBRYO DEFECTIVE 975, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20300 59 / 3e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22670 58 / 4e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 58 / 5e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G39230 57 / 8e-09 LOJ LATERAL ORGAN JUNCTION (.1) AT5G14820 57 / 9e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G79490 56 / 2e-08 EMB2217 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 56 / 2e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 55 / 5e-08 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G07290 55 / 7e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009057 [exp] 661 / 0 AT2G01860 508 / 5e-178 EMBRYO DEFECTIVE 975, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026884 [exp] 60 / 2e-09 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1) Lus10013841 [exp] 59 / 3e-09 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 58 / 6e-09 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016727 [exp] 57 / 1e-08 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 57 / 2e-08 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041193 [exp] 56 / 3e-08 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 56 / 3e-08 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10040869 [exp] 56 / 3e-08 AT1G07740 491 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252300 [exp] 416 / 2e-143 AT2G01860 530 / 0.0 EMBRYO DEFECTIVE 975, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 57 / 8e-09 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242200 [exp] 57 / 8e-09 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G150100 [exp] 57 / 1e-08 AT1G62930 442 / 8e-149 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G014100 [exp] 57 / 1e-08 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 57 / 2e-08 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G173400 [exp] 56 / 3e-08 AT1G79490 1295 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 56 / 4e-08 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.007G123900 [exp] 56 / 4e-08 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G019000 [exp] 55 / 4e-08 AT1G10910 796 / 0.0 EMBRYO DEFECTIVE 3103, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031347 pacid=23150949 polypeptide=Lus10031347 locus=Lus10031347.g ID=Lus10031347.BGIv1.0 annot-version=v1.0 ATGATGACCCGACCCGAGAAGCTCCCTTCACAAAAGAAACGTTTTAATCCCGTTTCGAATCAGTTTCACAAGGACCCAGTCTTCCTAGTCGACTTAGCTA AGCAGATTAGTAAGCTGAGACCTGACCAGAATGCTGACATAGTGCTTGAAAGATCATCGCATTTCTTGCGAAAGGGTTCGCTATTGATGACGATTCGGGA GCTCGGTCACATGGGATTGCCGAGCAGAGCTTTGGAGACGCTCTGCTGGGTGCAGAAGCAGGAACATCTCGTTCCTGACGACAGGACGCTAGCCTCCACG GTGGAAGTTCTGGCGAGGAATCGCGGGTTGAAATTGCCGGCTTTCGATTGGGTGAGGATGGTGAAGCTGGCGAGTAGGAACGTAATTGAATCGATGATTC GTGGGTTTGTTAAAGGTGGCAGCTTGCATCTTGCATTGAAGCTGTTGACGGTTGCCAAGCAAGAGAGGAAAGTGTTGGATGCTGGCTTGTACGCCAAGTT AGCTTTAGAGCTGGCGAAGAATCCTGATAAGGTCAGGATTGTAGAAGCATTGCTCGAGGAGCTGGCCGAAATGGCAGAGGATGAAGAAATGAAGCTGAGC CAGCAGGATTGTACTTCGCTGATGAAGGTTGGCGCGAAGCTCGGGAAGTTTGATCTCGTTGAAGGGTTGTTCGAATGGTTTACAACGACTCAGAAGAAGA AGAAGCCGGGGGTGGTTATGTACACGATGTTGATCCACAGTCGGGTTTCTGAAGGGAGGTATCGGGAGGCGCTGGCTGTGCTGTGGGAGATGGAAGGTGA AGGGTGCTTGTTGGATCTGCCGGCTTATCGGGTGGTGATTAAGCTGTTTGTTGCTGCAAACGATGTGGCGAGGGCTTCTCGATACTTTTCGAAGATGAAG GATGCCGGGTTTGCTCCGAGTTATGATGTGTATAAGGATATGGTTAGGGTTTATATGGTTTCCGGGAGGGTGGCTAAGTGCAAGGAGGTTTGGAAGGAGG CTGAGATGGCTGGGTTTAGGTTCCATAGGGAAATGTGTTTGCTGTTGATGCAGCTTGATCAACGATGTTCCGTTACCTGA
AA sequence Show only first row Show all	>Lus10031347 pacid=23150949 polypeptide=Lus10031347 locus=Lus10031347.g ID=Lus10031347.BGIv1.0 annot-version=v1.0 MMTRPEKLPSQKKRFNPVSNQFHKDPVFLVDLAKQISKLRPDQNADIVLERSSHFLRKGSLLMTIRELGHMGLPSRALETLCWVQKQEHLVPDDRTLAST VEVLARNRGLKLPAFDWVRMVKLASRNVIESMIRGFVKGGSLHLALKLLTVAKQERKVLDAGLYAKLALELAKNPDKVRIVEALLEELAEMAEDEEMKLS QQDCTSLMKVGAKLGKFDLVEGLFEWFTTTQKKKKPGVVMYTMLIHSRVSEGRYREALAVLWEMEGEGCLLDLPAYRVVIKLFVAANDVARASRYFSKMK DAGFAPSYDVYKDMVRVYMVSGRVAKCKEVWKEAEMAGFRFHREMCLLLMQLDQRCSVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10031347 [exp]	0	1
AT4G28703			RmlC-like cupins superfamily p...		Lus10014252 [exp]	6.6	0.7960
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	10.4	0.8107
AT1G16670			Protein kinase superfamily pro...		Lus10026207 [exp]	14.9	0.8233
AT4G21510			F-box family protein (.1)		Lus10011255 [exp]	24.4	0.7970
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	39.6	0.7949
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10019729 [exp]	49.0	0.7705
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10038965 [exp]	69.1	0.6987
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10010289 [exp]	72.4	0.7249
AT1G55915			zinc ion binding (.1)		Lus10035761 [exp]	86.3	0.6917
AT3G25570			Adenosylmethionine decarboxyla...		Lus10000156 [exp]	100.3	0.7287

Compare expression of checked genes

Lus10031347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.