Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18000 843 / 0 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G73600 837 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G48600 826 / 0 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G64970 75 / 2e-14 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT5G13710 70 / 7e-13 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G20330 66 / 2e-11 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 56 / 2e-08 SMT3 sterol methyltransferase 3 (.1) AT4G33110 50 / 1e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 45 / 5e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G23360 43 / 0.0002 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042006 [exp] 935 / 0 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018010 [exp] 931 / 0 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 909 / 0 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10009537 [exp] 72 / 2e-13 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10020357 [exp] 71 / 2e-13 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10023995 [exp] 64 / 4e-11 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10005625 [exp] 61 / 9e-10 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10022684 [exp] 59 / 5e-09 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029124 [exp] 51 / 7e-07 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047400 [exp] 874 / 0 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 866 / 0 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.012G047301 [exp] 207 / 5e-65 AT1G48600 213 / 8e-68 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G263700 [exp] 83 / 4e-17 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 75 / 1e-14 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.013G077000 [exp] 75 / 2e-14 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.005G245800 [exp] 67 / 7e-12 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 60 / 1e-09 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.016G056000 [exp] 57 / 2e-08 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.019G089700 [exp] 49 / 6e-06 AT3G18000 53 / 2e-07 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10031348 pacid=23150967 polypeptide=Lus10031348 locus=Lus10031348.g ID=Lus10031348.BGIv1.0 annot-version=v1.0 ATGGCGGCTAACGGTACAGCACCTGTGGTGGAGCGGGACATTCAGAAGAGCTACTGGATTGAGCACTCCGTTGATCTGACTGTGGAGTCGATGATGCTGG ACTCCAAAGCCTCCGATCTCGACAAAGAAGAACGGCCTGAGGTGCTCTCTATGCTTCCACCGTACGAAGGAAAATCGGTGCTGGAACTGGGAGCTGGTAT CGGTAGGTTCACCGGAGAGATAGCTAAGAAGGCTGGCCAAGTTGTAGCTCTGGATTTCATCGACAGCGTGATAAAGAAGAATGAGAACACCAATGGACAC TTCAAGAATGTCAAGTTCATGTGTGCTGATGCCACATCCCCAACCCTCAACTTCTCAGAAGGATCCATGGATTTGATCTTCTCCAACTGGCTTCTTATGT ATCTCTCCGATGTTGAGGTGGAGAACCTGGCGGAAAGAATGGTGAAATGGCTGAAAGTTGGAGGGTGCATCTTCTTTAGGGAGTCTTGCTTCCACCAATC TGGAGATAGCAAGAGGAAGTACAACCCAACACACTACCGTGAACCAAGGTTCTACACCAAGGTCTTTATGGGCAGCCGTATGCAAGATGAATCTGGAGTT TCATATGAGCTCTCTCTTGTCGGATGCAAATGCATCGGAGCTTATGTCAAAAGCAAAAAGATCCAGAACCAGATTTGCTGGATATGGCAGAAAGTCCGTT CCCAGGACGACAAAGGCTTCCAGCAATTCCTCGACAACGTCCAGTACAAATCCACCGGAATCCTCCGCTACGAACGTGTATTCGGGCAAGGCTTCGTCAG CACTGGAGGCTTAGAAACGACGAAAGAATTCGTGTCGAGGCTGGACCTGAAACCGGGGCAGAAAGTCCTCGACGTAGGCTGTGGCATAGGCGGAGGCGAC TTCTACATGGCCGAGAACTTCGATGTAGAGGTGGTTGGGATCGACCTCTCGATCAACATGGTCTCGTTCGCACTTGAACGAGCCATTGGTTTGAAATGCT TGGTGGAATTCGAGGTAGCTGACTGTACCAAGAAGACGTACCCTGACGAGACGTTCGATGTCATCTATAGTCGCGACACGATCCTTCATATCCAGGATAA GCCTGCTCTGTTTCGATCATTCTACAAGTGGCTGAAGCCCGGAGGGAAAGTTCTCATCAGTGACTACTGTAAGAGTGCTGGAAGTCCTTCGGAGGAGTTT GCTGAGTATATTAAGCAGCGTGGGTATGATCTTCATGATGTCAAAGCTTACGGACAGATGCTGAGAGATGCCGGTTTCCAGGAAGTCGTAGCTGAGGACC GCACAAACCAGTTCAACCAAGTTCTGCAGCGGGAGCTGGATGCCATAGAGAAAGAGAAGCAAACATTCATCAGTGACTTCTCAGAGGAAGACTACAACGA TATCGTCGGTGGATGGAAGTCAAAGCTCGTTAGGAGCTCTGCCGGCGAGCAGAAGTGGGGCCTGTTCATTGCCAAGAAGTGA
AA sequence Show only first row Show all	>Lus10031348 pacid=23150967 polypeptide=Lus10031348 locus=Lus10031348.g ID=Lus10031348.BGIv1.0 annot-version=v1.0 MAANGTAPVVERDIQKSYWIEHSVDLTVESMMLDSKASDLDKEERPEVLSMLPPYEGKSVLELGAGIGRFTGEIAKKAGQVVALDFIDSVIKKNENTNGH FKNVKFMCADATSPTLNFSEGSMDLIFSNWLLMYLSDVEVENLAERMVKWLKVGGCIFFRESCFHQSGDSKRKYNPTHYREPRFYTKVFMGSRMQDESGV SYELSLVGCKCIGAYVKSKKIQNQICWIWQKVRSQDDKGFQQFLDNVQYKSTGILRYERVFGQGFVSTGGLETTKEFVSRLDLKPGQKVLDVGCGIGGGD FYMAENFDVEVVGIDLSINMVSFALERAIGLKCLVEFEVADCTKKTYPDETFDVIYSRDTILHIQDKPALFRSFYKWLKPGGKVLISDYCKSAGSPSEEF AEYIKQRGYDLHDVKAYGQMLRDAGFQEVVAEDRTNQFNQVLQRELDAIEKEKQTFISDFSEEDYNDIVGGWKSKLVRSSAGEQKWGLFIAKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10031348 [exp]	0	1
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10037309 [exp]	1.0	0.9380
AT1G73600			S-adenosyl-L-methionine-depend...		Lus10009056 [exp]	3.3	0.9043
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10002625 [exp]	7.4	0.9167
AT3G17430			Nucleotide-sugar transporter f...		Lus10017115 [exp]	7.9	0.8665
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	10.0	0.9272
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	10.4	0.9232
AT1G63100	GRAS		GRAS family transcription fact...		Lus10029592 [exp]	11.7	0.9134
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	13.6	0.9265
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10039928 [exp]	14.8	0.8959
AT2G34970			Trimeric LpxA-like enzyme (.1)		Lus10033841 [exp]	17.2	0.8697

Compare expression of checked genes

Lus10031348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.