Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77920 378 / 2e-130 bZIP bZIP transcription factor family protein (.1) AT5G65210 353 / 1e-120 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT5G10030 350 / 1e-119 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G22070 345 / 4e-117 bZIP TGA3 TGA1A-related gene 3 (.1) AT1G08320 262 / 3e-85 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT3G12250 251 / 2e-81 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 250 / 8e-81 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06839 252 / 2e-80 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT5G06960 249 / 2e-80 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G68640 230 / 1e-71 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009055 [exp] 611 / 0 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1) Lus10042005 [exp] 511 / 0 AT1G77920 428 / 5e-150 bZIP transcription factor family protein (.1) Lus10018009 [exp] 507 / 0 AT1G77920 424 / 2e-148 bZIP transcription factor family protein (.1) Lus10037550 [exp] 298 / 7e-98 AT5G65210 444 / 3e-155 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10011445 [exp] 290 / 7e-96 AT5G65210 449 / 2e-158 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10035873 [exp] 287 / 1e-94 AT5G65210 456 / 3e-161 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10024140 [exp] 274 / 5e-90 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 268 / 6e-88 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10026166 [exp] 268 / 1e-87 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G170500 [exp] 442 / 1e-155 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 420 / 3e-147 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.007G085700 [exp] 344 / 6e-117 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G082000 [exp] 323 / 8e-109 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.007G079900 [exp] 265 / 5e-88 AT5G10030 339 / 5e-117 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) Potri.001G029800 [exp] 269 / 2e-86 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.016G036500 [exp] 269 / 2e-86 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.006G039000 [exp] 268 / 5e-86 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.006G058800 [exp] 269 / 9e-86 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.003G194600 [exp] 266 / 3e-85 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10031349 pacid=23151099 polypeptide=Lus10031349 locus=Lus10031349.g ID=Lus10031349.BGIv1.0 annot-version=v1.0 ATGATGAGCTCTCCAACAACTCAACTAGCAATCCTGAGAGGAATGGGGATCTACGAGCCATTCCAGCAGATCAGTTCATGGACAGCTGACCCTTTCAGAG GAGACAGCATCCTCAACATCACACCAAGTCCAACCCCCCCAATTCCGCCACTCGAAAATCGGACTGATAATGTCTCTCATGAGTCCATTACTGAGCCTTC CAGGAGTGATCAAGAAGGTGTAGGGGGCAGACCTTATGATAACAATAATATTAAGGCGCAGAGACGATTGGCTCAGAATCGGGAAGCTGCTCGCAAGAGC CGGTTGAGGAAGAAGGCTTATGTTCAGCAATTGGAAACAAGCCGTTTGAAGTTGGCACAGTTAGAGCAAGAGCTTCAGAGAGCTAGGCAACAGGGTATGT ACATAAACAATGACATGGATTTCGGAGTGCCCGGGATTTCGAATTCAGGCATAGCGACATTCGAGATGGAATACGCACACTGGATCGAAGAACAGCACAC CAAAGTATCGGAGCTTCGTAGAGCATTGCAATCCCACATCCGAGACGTGGAGCTCAGAATCCTAGTGGAGAACGGATTTGCACATTTCAACAGTCTTTTC AGGATGAAAGCAGAGGCAGCCAAGGCCGATGTTTTCTACATCATTTCCGGGAAATGGAGGACCTCCGTAGAGAGGTTCTTCCTCTGGATCGGCGGGTTTC GCCCATCGGAGCTTCTAAACGTTTTATTGCCGCAACTAGAGCCATTGACGGACCAACAACATTGCGACGTATGCACTCTCCGACAATCGAGCCAACAAGC GGAGGACGCGCTCTCTCAAGGGATCGATAAGCTCCAGCAGACTCTGTCCCAAAGCCTGGCGGTCGACCAGAGCATTGGTGGAAGTTACAGGGTTCAGATG GCTGCAGCCATAGAGAGGCTCGAAGGGCGTGAAGGGGTCGCTAACCAGGCGGGTCACTTGGGGAGTCAGACCTTGCACCACATGTCGCGGATCCTCACAA CTAGACAGGCTGCCAGAGGGTTGCTCGCGTTGGGGGAGTACTTGGAGCGCCTCCGTGCGCTCAGCTCGCTCTGGGCTGCTCGTCCTCGCGAGCCTACATG A
AA sequence Show only first row Show all	>Lus10031349 pacid=23151099 polypeptide=Lus10031349 locus=Lus10031349.g ID=Lus10031349.BGIv1.0 annot-version=v1.0 MMSSPTTQLAILRGMGIYEPFQQISSWTADPFRGDSILNITPSPTPPIPPLENRTDNVSHESITEPSRSDQEGVGGRPYDNNNIKAQRRLAQNREAARKS RLRKKAYVQQLETSRLKLAQLEQELQRARQQGMYINNDMDFGVPGISNSGIATFEMEYAHWIEEQHTKVSELRRALQSHIRDVELRILVENGFAHFNSLF RMKAEAAKADVFYIISGKWRTSVERFFLWIGGFRPSELLNVLLPQLEPLTDQQHCDVCTLRQSSQQAEDALSQGIDKLQQTLSQSLAVDQSIGGSYRVQM AAAIERLEGREGVANQAGHLGSQTLHHMSRILTTRQAARGLLALGEYLERLRALSSLWAARPREPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10031349 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	5.5	0.9564
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	8.2	0.9525
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	10.2	0.9511
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10033867 [exp]	11.0	0.9504
AT3G47570			Leucine-rich repeat protein ki...		Lus10020140 [exp]	14.7	0.9427
AT5G65500			U-box domain-containing protei...		Lus10025715 [exp]	15.7	0.9305
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	16.6	0.9463
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	17.1	0.9446
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	23.2	0.9409
AT5G61820			unknown protein		Lus10017315 [exp]	23.2	0.9414

Compare expression of checked genes

Lus10031349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.