Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48480 592 / 0 RKL1 receptor-like kinase 1 (.1) AT3G17840 566 / 0 RLK902 receptor-like kinase 902 (.1) AT3G02880 553 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 546 / 0 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT5G58300 470 / 8e-159 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 450 / 4e-151 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 431 / 8e-144 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT4G23740 387 / 9e-127 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 376 / 5e-123 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 372 / 2e-120 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010973 [exp] 989 / 0 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10004040 [exp] 744 / 0 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10017996 [exp] 593 / 0 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10031337 [exp] 535 / 0 AT1G48480 771 / 0.0 receptor-like kinase 1 (.1) Lus10035012 [exp] 486 / 3e-165 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10002299 [exp] 474 / 5e-165 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10021673 [exp] 481 / 2e-163 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 469 / 1e-158 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 468 / 5e-158 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130600 [exp] 701 / 0 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 697 / 0 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 646 / 0 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.012G044600 [exp] 617 / 0 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.013G158800 [exp] 489 / 1e-166 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 488 / 6e-166 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 486 / 3e-165 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 469 / 1e-158 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 460 / 2e-154 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 431 / 4e-144 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031350 pacid=23155903 polypeptide=Lus10031350 locus=Lus10031350.g ID=Lus10031350.BGIv1.0 annot-version=v1.0 ATGATTCCCCGCCCTTTCTTCTTCCTTTTGGCGGCGGCGCTTTTGCTCCCGACGGCGGATTCAGACCTCGCCGCGGACAGAGCCGCCCTCGTGGCTCTAC GCACCGCCGTCGGGGGAAGGTCTCGGCTGTGGAACTTATCTTCTGACTCTCCCTGCAACTGGGTCGGCGTCAGTTGCGCCGGAAACAGGGTCGTGGAGCT CCGACTACCAGGGATGGGTCTCTCCGGTGAGCTCCCTATCGGACTCGGAAACTTAACTCAGCTCATCACTCTCTCTCTCCGCTTCAACGCGCTCAGAGGG AGTGTTCCTGATGACGTGTCGAATCTCCGCTCCTTAAGGAATCTCTTTTTACACGGCAACTTATTCACCGGCGAGATTCCCGGTGTCCTGTTCCGTATGC AGAGTTTGGTGAGGATTAATTTGGCGGATAATCGGTTTACCGGGTCGATCTCGCCGGATTTCAATAACTTGACCCGGCTGGCGACTATGTATCTGGAAGG GAATCAGCTCACCGGTCCGATCCCGAACATCAATGTACCGCCGTTGGATCAATTCAACGTCTCGTTCAATAATTTATCCGGACAGATTCCAGATTCTCTG TCGGGAAAACCCGCCGCCTCATTCGAAGGCAACTCCTTGCTCTGCGGACGACCTTTGGTCGTCTGTAGAGACCGGAGAAGAAAATTTTCCGGTGGAGAAG TTGCCGGAATTACGATCGGGTGCATGTTTGGGGTTCTGCTGATTCTGATCATCGTCTTCTTCTTATGCCGGCGGAAGGAGGAGAGTTCAGAAACAGAGGA ATTTGGAAACAAGGCGGTTGAGAAACAGGGGATGTCGTCGGAGAGTGGTAAGAATTTGGTGTTCTTTGGGGAGACGCCGAGGGGTTTTAATTTGGAGGAT TTGTTGAGGGCGTCGGCGGAGGTGTTGGGGAAAGGGACGTTTGGGACGACTTACAAGGCGACTCTGGATATGGGGTTTGTGACGGCGGTGAAGAGGTTGA AGGAGGTGATTGTGGGGGAGAAAGAATACAGAGAGAAGATTGAAGGAATTGGGAAGATGGGGAATCATGAGAGCTTGGTGCCGTTGAAGGCTTACTATTA CAGTAGGGATGAGAAGCTTCTGGTTTATGAGTTCATGCCCATGGGAAGCTTGTCCGCACTCTTACATGGAAACAGAGGAGGAGCAGGGAGGAATCCATTG AACTGGGACACAAGATCCACAATCGCACTCAAAGCCGCCAGAGGAATCGCATACCTACACTCTCAAGGCCCATCGATCTCCCACGGAAACATCAAGTCAT CAAACATCCTCCTCACCAAATCATACGAGCCTCGGATCTCGGATTTTGGACTCAACCAAGTCGCAGCCGGTCCGGCCGCTCCGAACCCGAACCGGACCGA AGGGTACCGTGCCCCGGAAGTAACGGACGGTCACAAGGTGTCCCAGAAGGCTGACGTGTACAGCTTCGGAGTATTGCTGCTGGAATTGCTGACGGGGAAG GCGGCTAATGCGGAGGGTGACGTGGACCTTCCGCAGTGGGTCCGGTCGGTTGTGAAGGAAGAATGGAGTTCCAAAGTGTTTGATCTTGAGCTGATGAGGT ACCAGAATGTTGAGGAAGAGATGGTGAAAATGTTGCAGGTCGCCGTTGACTGTACGGGTCAGGTCCCCGACACGCGTCCTTCGATGGCTGAGGTGTGCGG GAGGGTCGAGGAGATCTGTCGGTTGAACGGCGGCGGAGATCACTCCCAAGATGGCGGCGGGATTGTTGTGGATTACACGTCAGGGCAGGAGCAGAGTTGG TCGGTTGATTCAGGGGCGCCGGCGCCGCAGTCCTCGTGA
AA sequence Show only first row Show all	>Lus10031350 pacid=23155903 polypeptide=Lus10031350 locus=Lus10031350.g ID=Lus10031350.BGIv1.0 annot-version=v1.0 MIPRPFFFLLAAALLLPTADSDLAADRAALVALRTAVGGRSRLWNLSSDSPCNWVGVSCAGNRVVELRLPGMGLSGELPIGLGNLTQLITLSLRFNALRG SVPDDVSNLRSLRNLFLHGNLFTGEIPGVLFRMQSLVRINLADNRFTGSISPDFNNLTRLATMYLEGNQLTGPIPNINVPPLDQFNVSFNNLSGQIPDSL SGKPAASFEGNSLLCGRPLVVCRDRRRKFSGGEVAGITIGCMFGVLLILIIVFFLCRRKEESSETEEFGNKAVEKQGMSSESGKNLVFFGETPRGFNLED LLRASAEVLGKGTFGTTYKATLDMGFVTAVKRLKEVIVGEKEYREKIEGIGKMGNHESLVPLKAYYYSRDEKLLVYEFMPMGSLSALLHGNRGGAGRNPL NWDTRSTIALKAARGIAYLHSQGPSISHGNIKSSNILLTKSYEPRISDFGLNQVAAGPAAPNPNRTEGYRAPEVTDGHKVSQKADVYSFGVLLLELLTGK AANAEGDVDLPQWVRSVVKEEWSSKVFDLELMRYQNVEEEMVKMLQVAVDCTGQVPDTRPSMAEVCGRVEEICRLNGGGDHSQDGGGIVVDYTSGQEQSW SVDSGAPAPQSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031350 [exp]	0	1
AT1G64160			Disease resistance-responsive ...		Lus10017539 [exp]	1.7	0.9149
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10008529 [exp]	2.0	0.9134
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	2.2	0.9181
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026906 [exp]	4.8	0.8852
AT1G49230			RING/U-box superfamily protein...		Lus10005818 [exp]	4.9	0.9157
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10007879 [exp]	5.9	0.9104
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	7.0	0.9062
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10041721 [exp]	7.7	0.8921
AT5G49690			UDP-Glycosyltransferase superf...		Lus10008955 [exp]	8.5	0.8868
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10019774 [exp]	8.5	0.9006

Compare expression of checked genes

Lus10031350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.