Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010972 [exp] 229 / 4e-71 ND / Lus10032068 [exp] 143 / 3e-38 ND / Lus10014600 [exp] 143 / 4e-38 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G088000 [exp] 216 / 3e-66 ND / Potri.017G058200 [exp] 150 / 4e-41 ND / Potri.001G318600 [exp] 148 / 4e-40 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031351 pacid=23156036 polypeptide=Lus10031351 locus=Lus10031351.g ID=Lus10031351.BGIv1.0 annot-version=v1.0 ATGAAGAGAAAGAAATGGTCGGAAGTAGAAGAGCAGACACTACTCTCCAAATACAACGACCTCAAAACTTCCGGCTCCCTCTCCAAGCTGAAAACCCGCG AGAAGAAGTTCCGTCCAATCGCCGACCACGTCAACGCCGTCCACCATCTCCAGGACTCCGTCGCCTTCCCTTTCAAGTGGTCGTGGCGGGACGTCTCCAT CAAATTCCAGAACATGCGGCACCAGTACATCGGGGTGAAGCAGAAGATCCGCGTTTCCAAGGACGAGTTCAACTGGAAAGACGGAGAGCATCACTGGGAG AATTTCCTCCGGTACAAGGAAGTCTTCGGCGACGTCGAGCTCCTCAATTCCAGGAGCAAGAAATTCTTCTCCTTTAGTGATAATAATAGCAGCAGCGATT TGTTTAGGGATTGCGGCGATCTAGGATTAGGGTTCGACAGCGACGATTTGGAGGAGGAAGATGACGATGATGATGAATTGGAGGAGGACGGCGATCAGGA AGAGGGAGAAGATGAGGATTTGAAAGAAGGAGAGAGTAATTGCGACGATGGTGATGATGAAGACATGGGTTCCGGCGATGATTGTAACAATGGTGAAGAT CAGGATTGTGAATTTGGGGGAAAAGTCAATAATAAGCGAAAGAAGGGGAAATTGAAGGGGGTGAATAAGAGATTGGGATTGCTTGGAGCACAGGTTGTGG AATTGAAAGATATGGTGGTGAGGAGGGAGGAGAAGAGGAGGGAAAGGGAATTCGATCGCGAAACTCGCGTTTTCCAGAGGAAGCAGCGGACGCAATCGGA AGACTCGTCGAAGTTGGAGGATTGGGAAATGGAGCTGGAAGAGAGGGAGATGGCTTGGGGAAAGAGGAAGTTGAGGGAAGAGATTGATTTGGTAGAGAAG AGGAGGAAGATGAGGGAAATGGAGGAGAAAAGAGAGAAGGAAGAGATGGAGTGGAGGGAGAAGGTGATGAGGCTGCAGATTGAGCATGAGAAGTTGATGA TGCAGATTCAAGCTGAGGCTTGCCAGAACCAGATTCAGATTCTCGGTGTGATGGCGCGGCTTGTGTGCTCGATTTACGGGGCTGGTGGGAGCGATGGGCT GGGCGGTAGTTTGGGAGGTTTGGCGCCGCATCAGGTTATGGGGAATTTGCAGCAACATTCTGATGGTGGGTTGGGTGGTGATGATAATGGGAAGCCCGAC TCCAGTTCACCTTCTGAATTCCTTTAA
AA sequence Show only first row Show all	>Lus10031351 pacid=23156036 polypeptide=Lus10031351 locus=Lus10031351.g ID=Lus10031351.BGIv1.0 annot-version=v1.0 MKRKKWSEVEEQTLLSKYNDLKTSGSLSKLKTREKKFRPIADHVNAVHHLQDSVAFPFKWSWRDVSIKFQNMRHQYIGVKQKIRVSKDEFNWKDGEHHWE NFLRYKEVFGDVELLNSRSKKFFSFSDNNSSSDLFRDCGDLGLGFDSDDLEEEDDDDDELEEDGDQEEGEDEDLKEGESNCDDGDDEDMGSGDDCNNGED QDCEFGGKVNNKRKKGKLKGVNKRLGLLGAQVVELKDMVVRREEKRREREFDRETRVFQRKQRTQSEDSSKLEDWEMELEEREMAWGKRKLREEIDLVEK RRKMREMEEKREKEEMEWREKVMRLQIEHEKLMMQIQAEACQNQIQILGVMARLVCSIYGAGGSDGLGGSLGGLAPHQVMGNLQQHSDGGLGGDDNGKPD SSSPSEFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031351 [exp]	0	1
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043185 [exp]	1.4	0.8885
AT3G05670			RING/U-box protein (.1)		Lus10015213 [exp]	1.4	0.8941
AT5G67320		HOS15	high expression of osmotically...		Lus10024972 [exp]	2.4	0.8774
AT1G14450			NADH dehydrogenase (ubiquinone...		Lus10038124 [exp]	4.7	0.8369
AT4G12710			ARM repeat superfamily protein...		Lus10041090 [exp]	5.5	0.8568
AT1G78310			VQ motif-containing protein (....		Lus10010346 [exp]	5.7	0.8446
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10034688 [exp]	6.3	0.8674
AT1G71180			6-phosphogluconate dehydrogena...		Lus10001349 [exp]	7.3	0.8486
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10033094 [exp]	8.4	0.8213
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	10.9	0.8449

Compare expression of checked genes

Lus10031351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.