Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25830 213 / 9e-65 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 213 / 9e-65 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT3G25810 212 / 2e-64 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT2G24210 211 / 4e-64 AtTPS10 terpene synthase 10 (.1) AT4G16730 187 / 2e-55 AtTPS02 terpene synthase 02 (.1) AT4G16740 180 / 2e-52 ATTPS03 terpene synthase 03 (.1.2) AT1G61680 121 / 6e-31 ATTPS14 terpene synthase 14 (.1.2) AT1G33750 90 / 4e-20 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 90 / 5e-20 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 86 / 1e-18 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033643 [exp] 390 / 2e-132 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10001110 [exp] 325 / 2e-108 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10038179 [exp] 322 / 1e-106 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10025922 [exp] 316 / 3e-104 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006355 [exp] 273 / 5e-87 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10012312 [exp] 269 / 8e-86 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10006356 [exp] 268 / 1e-85 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10018500 [exp] 219 / 3e-67 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10039713 [exp] 201 / 4e-60 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023020 [exp] 247 / 3e-80 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023006 [exp] 243 / 4e-76 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 238 / 8e-75 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G118600 [exp] 232 / 4e-72 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 220 / 2e-67 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G022338 [exp] 218 / 1e-66 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 201 / 2e-60 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308300 [exp] 200 / 6e-60 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 194 / 5e-57 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.011G031800 [exp] 179 / 6e-52 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10031352 pacid=23155832 polypeptide=Lus10031352 locus=Lus10031352.g ID=Lus10031352.BGIv1.0 annot-version=v1.0 ATGGAATTCGCAAGAGATCCATTGGTGGAGAGCTTCCTATGGGCTATCGGAATGACATCTCACCCTGAAATGGGAGAATGTAGAAAAGCCATGGCCAAGG TGGCAATCATTGTCCATGTCATCGATGACGTGTACGATGTTTACGGCTTCATGGATGAACTCGAGCTCTTCACCGCCGCCATCGAGAGGTGGGATATCAA GGAGCTCGACATGCTTCCTCGTTATATGCAGCTCTGTTTCCTGGCAGTCTACAATACTGGAAACGACACCTGTTACGGCAATCTCAAACGACAAGGAATC AATACCTTCCCGGATATTCGAAAATCGTGGGTGGATCTCTGCCGTTCATACATGGAAGAAGCAAGGGCTTACCGTTCTGAAAGTGACCAAAACTTGGAGC AATACTTGAACGTTGCATGGAGATCTGTCGGGTGTGATGTCGTCCTGATTCACGGCTATCTTTCGAACCGGTCTGAAACCATAAGCCGCGAAACTCTGGA TCTTCTGTCGCAATATTCCGATCCCAACCTCACTCGTTTGGCATCGATTGTCGTTCGTTTAACCAATGATCTCGCCAGCTCCAAGGGGGAGCTGGAGAGG GGAGATGTTCTGAAAGCAGTCGAGTGTTACATGCGGGAGAACAAAGTGTCGGAGGAATTCGCTCGAGACCACGTGAATTGGCTGATCGACGAGACATGGA AATCGATGAATGAACTAGTTACGTCGATCAAATGTCGCGATCTTCCTCCGACTTATGTGGATCTTGCTGTCGGTGTAGCTCGAGCGAGCCACTACATGTA TAAACATGGAATGTCGAAGGGGTTGTCAACTTCGAACGACAAGGACAGGGCTGTGTCGTTGCTTTTCGAACCGCTTTGA
AA sequence Show only first row Show all	>Lus10031352 pacid=23155832 polypeptide=Lus10031352 locus=Lus10031352.g ID=Lus10031352.BGIv1.0 annot-version=v1.0 MEFARDPLVESFLWAIGMTSHPEMGECRKAMAKVAIIVHVIDDVYDVYGFMDELELFTAAIERWDIKELDMLPRYMQLCFLAVYNTGNDTCYGNLKRQGI NTFPDIRKSWVDLCRSYMEEARAYRSESDQNLEQYLNVAWRSVGCDVVLIHGYLSNRSETISRETLDLLSQYSDPNLTRLASIVVRLTNDLASSKGELER GDVLKAVECYMRENKVSEEFARDHVNWLIDETWKSMNELVTSIKCRDLPPTYVDLAVGVARASHYMYKHGMSKGLSTSNDKDRAVSLLFEPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10031352 [exp]	0	1
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10023417 [exp]	1.0	0.9069
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10007643 [exp]	2.0	0.8806
AT3G23920		BAM1, BMY7, TR-...	BETA-AMYLASE 7, beta-amylase 1...		Lus10023700 [exp]	4.6	0.7903
AT2G23570		ATMES19	ARABIDOPSIS THALIANA METHYL ES...		Lus10020004 [exp]	8.7	0.8391
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10018758 [exp]	12.0	0.8356
AT3G63390			unknown protein		Lus10018745 [exp]	14.8	0.7135
					Lus10034724 [exp]	16.6	0.7887
					Lus10024189 [exp]	17.4	0.8499
AT3G45400			exostosin family protein (.1)		Lus10005684 [exp]	20.1	0.8076
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10035802 [exp]	23.3	0.7695

Compare expression of checked genes

Lus10031352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.