Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25820 56 / 4e-09 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT3G25830 56 / 4e-09 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT2G24210 54 / 2e-08 AtTPS10 terpene synthase 10 (.1) AT3G25810 51 / 1e-07 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16740 49 / 5e-07 ATTPS03 terpene synthase 03 (.1.2) AT4G16730 40 / 0.0005 AtTPS02 terpene synthase 02 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033643 [exp] 94 / 3e-22 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10025922 [exp] 93 / 9e-22 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10038179 [exp] 87 / 1e-19 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006356 [exp] 70 / 6e-14 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10001110 [exp] 65 / 3e-12 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012312 [exp] 56 / 4e-09 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10006355 [exp] 51 / 2e-07 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10008614 [exp] 51 / 2e-07 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10042202 [exp] 49 / 1e-06 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G016116 [exp] 56 / 3e-09 AT5G23960 236 / 8e-75 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 54 / 2e-08 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 53 / 2e-08 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.007G118600 [exp] 52 / 7e-08 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.019G023018 [exp] 51 / 8e-08 AT4G16740 115 / 2e-30 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 52 / 9e-08 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G119700 [exp] 51 / 2e-07 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.019G023006 [exp] 50 / 2e-07 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G045100 [exp] 50 / 2e-07 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G016400 [exp] 50 / 2e-07 AT5G23960 436 / 5e-148 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031353 pacid=23155813 polypeptide=Lus10031353 locus=Lus10031353.g ID=Lus10031353.BGIv1.0 annot-version=v1.0 ATGGCGGTTGTCGGTGCTGGTCGTGTTCTTAACTCCGGCCTAATTGCCGGCGGCGGCGGATTCATGAATAACCCAGCAAACAGACAGTTTATCACTATGG ATAATCTTCGTTTCATGAAATATCGTAATTGTTCATCAACTTCTGTAATGTGTAACATGCAGCAGGACGAAGCTACTGGTAAAAACATTCATCGTAGATC TGGCAACTACCAGCCGGGGATGTGGGGCATCGACGATTCTCCTCATCGTCACTTACTTCACTACGCTGGCGGCGCCAGCACTACTTTCCCGTCCACCAAT AGTACTGATTCATCATCAAGAACAATGGTGAAAATGGAAGAGTTGAAGAAATATGTGAAGGGTTTGATAGAGGAGAAGGCTATGGGAAGTGATGAACAAG TAACACACAAGCTGGAGTTGATTGATGAAGTTCAACGGCTAGGGTTGGGTTACCATTTTCATAGTGAGATTCATACTGCTCTCCAACAAATTGCTTCTTC TTCTGATCAGTCGCCGGAGCTGGAGAGCCTCCGTGCTCACGCCCTCCGGTTCAGGCTTTTCCGGCAGGCCGGCATCCCCATTTCCCAAGGTGGTGGAAAG ACTTGGGTCTGA
AA sequence Show only first row Show all	>Lus10031353 pacid=23155813 polypeptide=Lus10031353 locus=Lus10031353.g ID=Lus10031353.BGIv1.0 annot-version=v1.0 MAVVGAGRVLNSGLIAGGGGFMNNPANRQFITMDNLRFMKYRNCSSTSVMCNMQQDEATGKNIHRRSGNYQPGMWGIDDSPHRHLLHYAGGASTTFPSTN STDSSSRTMVKMEELKKYVKGLIEEKAMGSDEQVTHKLELIDEVQRLGLGYHFHSEIHTALQQIASSSDQSPELESLRAHALRFRLFRQAGIPISQGGGK TWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25820		ATTPS-CIN	"terpene synthase-like sequenc...		Lus10031353 [exp]	0	1

Compare expression of checked genes

Lus10031353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.