Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37020 962 / 0 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G30330 712 / 0 ARF ARF6 auxin response factor 6 (.1.2) AT1G19220 501 / 3e-163 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT1G19850 482 / 6e-158 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G20730 485 / 4e-156 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT5G62000 392 / 4e-124 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 374 / 3e-119 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 365 / 4e-114 ARF ARF4 auxin response factor 4 (.1) AT3G61830 355 / 9e-113 ARF ARF18 auxin response factor 18 (.1) AT2G46530 353 / 5e-112 ARF ARF11 auxin response factor 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010969 [exp] 1452 / 0 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10007386 [exp] 1160 / 0 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10020804 [exp] 1026 / 0 AT5G37020 913 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 710 / 0 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10033598 [exp] 704 / 0 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10017641 [exp] 693 / 0 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10017640 [exp] 676 / 0 AT5G37020 762 / 0.0 auxin response factor 8 (.1.2) Lus10027600 [exp] 514 / 2e-168 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10024320 [exp] 489 / 4e-163 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G078200 [exp] 1095 / 0 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.017G141000 [exp] 1083 / 0 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.011G091900 [exp] 721 / 0 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.005G207700 [exp] 714 / 0 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.002G055000 [exp] 713 / 0 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.001G358500 [exp] 708 / 0 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.006G138500 [exp] 520 / 2e-169 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G077800 [exp] 518 / 2e-169 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G145800 [exp] 514 / 1e-167 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.005G236700 [exp] 501 / 1e-164 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10031354 pacid=23155879 polypeptide=Lus10031354 locus=Lus10031354.g ID=Lus10031354.BGIv1.0 annot-version=v1.0 ATGAAGCTTTCAACGTCAGGGTTGAGTCAGCAGCAGAGTCAAGAAGGAGGAGAGAAGAAATGTCTGAATTCAGAGCTGTGGCATGCCTGCGCTGGACCAC TAGTGTCCCTACCCACAGTTGGAAGCCGCGTGGTTTACTTCCCTCAGGGTCACAGTGAGCAGGTGGTTGCCACTACTAACAAGGAAGTTGACGGTCACAT TCCGAATTATCCTAACCTTCCTGCTCAGCTTATATGCCAGCTTCACAATGTCACCATGCATGCAGATGTGGAAACAGATGAAGTGTATGCTCAGATGACA TTGCAGCCTTTGACTCCGGAAGAGCAAAAGGATACTTTTCTGCCGATGGAGTTGGGAATGCCTAGCAAGCAGCCCACTAATTACTTCTGCAAGACTTTGA CAGCTAGCGATACTAGTACACATGGCGGATTCTCTGTCCCTCGACGTGCCGCTGAGAAAGTCTTTCCACCGCTGGATTTTTCACAACAACCACCAGCTCA GGAGCTTATTGCAAGGGATCTGCATGATGTAGAGTGGAAATTCAGGCATATTTTTCGAGGACAGCCAAAGCGTCACCTACTCACAACAGGGTGGAGCGTG TTCGTCAGTGCAAAAAGACTTGTCGCAGGGGACTCAGTTTTGTTCATCTGGAACGAGAAGAATCAACTTCTCCTTGGAATTCGTCGGGCTACTCGACCAC AAACTGTAATGCCTTCGTCAGTTTTATCTAGTGATAGCATGCATATTGGACTTCTCGCTGCTGCTGCTCATGCCGCTGCAACTAATAGCTGTTTTACAGT TTTTTACAACCCAAGGGCTAGTCCATGTGAGTTTGTAATACCCCTTTCCAAATATGTGAAGGCTGTCTATCACACGCGTGTTTCAGTTGGGATGCGCTTC CGGATGCTTTTCGAGACTGAAGAATCAAGTGTTCGTAGGTACATGGGCACTATAACTGGAATAAGTGATCTAGATGCTGTTCGTTGGCCGAATTCTCATT GGCGGTCGGTGAAGGTTGGCTGGGATGAATCAACAGCAGGAGAAAGGCAGCCGAGGGTATCATTGTGGGAAATAGAACCTTTGACTACTTTCCCGATGTA CCCGTCACTCTTCCCCTTCCGGTTGAAACGTCCTTGGCATCCAGGATCCTCATCTTTTCCTGACTCCAGAGATGAAAATGGTAACAACCTAATGTGGCTG AGGGGTGGTGGAGCCGGAGATGGTCTTCCTCCGATGAATTTTCAAGCGGTCAACATGTTGCCATGGATGCAGCAGAGGGTGGATCCATCGTTGCTTCGAA ACGATAACAATCAATGGTACCAGGCGATGCTAGCGGCGAGCCTCCAGAGCTCTGAAAGTGGAGGAGATCCTATGAGGCAACAATTTATACAGTTACAGCA GCAGCAGCCTCTTCAGTATCAGCAGCAGTCAAGCATCAACTACCCGATTTTTACTTCACCAAGTCAAGTTCCAACCGATGGCCTCTTACAGCAGCAAATC GGTAATCAACCGGAAAATCACTCTCAGCAGCCGGAGCCTAGCTATCATGAATCGCTTCTCGGAGGCCAGCCAAGTCTGAATTCTCCGTCCTTTGCGAAAA CAGACTTCGCCGAACCCAACTCTAAGTTCGTGGGGTCCACAAGCACTATACAGAACATGTTGGGAAGTGGCAACCTTCTGGACTTGACCAGAACCGGTCA ACCTTCAATGACTCAGCAGCTCAACCAGGAACCTTGGGCCCCGCACCTGTACCCGGACAAGGATCCTGGCTCCAAACCAGGAAATGGTGGTGGCAATGAG GCACATAGTCCGAATAACTTTGGAATCAACATCGAATCGTCTGGACTCCTTCTACCCACCACTGTACGCAGAGTTGTTGCTACAACGTCCTCGAGTGATC CTGATGTGTCGTCAATGCCTTTAAGCGAGCCCGGGTTTCAGAATTCTCTCTACGAACAAGATTCTTCCGAGTTCTTACCGGGTGCGGGGCAATTGGATTC GCTAGAGGCAGGTCCAACATTTGTCAAGGTTTATAAGTCCGGGTCGGTTGGGCGGTCCCTGGACATCTCGCGGTTCAGCAACTATCCGGAGCTGAAGGAG GAACTGGCGCAAATGTTTGGAATCGAGGGGAAGTTGGAAAACCCTCATAGATCAGGCTGGCAGCTTGTGTTCGTTGACAAGGAGAACGATGTTCTTCTCC TTGGAGACGGTCCGTGGGAATCGTTTGTGAACAACGTGTGGTACATCAAGATACTGTCTCCGGACGACGTGGTGAAGATGGGGCAGCCGGGAGTCGAATC CTTCAGCCGGAATCCGAGCCAGAGAACCATCAGCAGCGGGGCTCCGGATCTCGCATCTGGTTCGTTTGGATACTGA
AA sequence Show only first row Show all	>Lus10031354 pacid=23155879 polypeptide=Lus10031354 locus=Lus10031354.g ID=Lus10031354.BGIv1.0 annot-version=v1.0 MKLSTSGLSQQQSQEGGEKKCLNSELWHACAGPLVSLPTVGSRVVYFPQGHSEQVVATTNKEVDGHIPNYPNLPAQLICQLHNVTMHADVETDEVYAQMT LQPLTPEEQKDTFLPMELGMPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSV FVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPCEFVIPLSKYVKAVYHTRVSVGMRF RMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPFRLKRPWHPGSSSFPDSRDENGNNLMWL RGGGAGDGLPPMNFQAVNMLPWMQQRVDPSLLRNDNNQWYQAMLAASLQSSESGGDPMRQQFIQLQQQQPLQYQQQSSINYPIFTSPSQVPTDGLLQQQI GNQPENHSQQPEPSYHESLLGGQPSLNSPSFAKTDFAEPNSKFVGSTSTIQNMLGSGNLLDLTRTGQPSMTQQLNQEPWAPHLYPDKDPGSKPGNGGGNE AHSPNNFGINIESSGLLLPTTVRRVVATTSSSDPDVSSMPLSEPGFQNSLYEQDSSEFLPGAGQLDSLEAGPTFVKVYKSGSVGRSLDISRFSNYPELKE ELAQMFGIEGKLENPHRSGWQLVFVDKENDVLLLGDGPWESFVNNVWYIKILSPDDVVKMGQPGVESFSRNPSQRTISSGAPDLASGSFGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	0	1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10010969 [exp]	1.0	0.9687
AT3G58640			Mitogen activated protein kina...		Lus10020708 [exp]	1.7	0.9381
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020804 [exp]	2.0	0.9449
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10007386 [exp]	2.8	0.9368
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10003190 [exp]	3.2	0.9005
AT4G34760			SAUR-like auxin-responsive pro...		Lus10007553 [exp]	4.0	0.9124
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030007 [exp]	4.2	0.9216
AT4G34760			SAUR-like auxin-responsive pro...		Lus10012189 [exp]	5.5	0.8922
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10030008 [exp]	5.9	0.9135
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	6.6	0.8991

Compare expression of checked genes

Lus10031354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.