Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30170 352 / 3e-122 Protein phosphatase 2C family protein (.1.2) AT4G16580 142 / 6e-39 Protein phosphatase 2C family protein (.1) AT5G66720 141 / 6e-39 Protein phosphatase 2C family protein (.1.2) AT4G33500 108 / 4e-26 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010968 [exp] 578 / 0 AT2G30170 364 / 9e-127 Protein phosphatase 2C family protein (.1.2) Lus10023916 [exp] 146 / 1e-40 AT4G16580 384 / 1e-130 Protein phosphatase 2C family protein (.1) Lus10014413 [exp] 145 / 1e-40 AT4G16580 390 / 4e-134 Protein phosphatase 2C family protein (.1) Lus10016309 [exp] 143 / 9e-39 AT4G16580 542 / 0.0 Protein phosphatase 2C family protein (.1) Lus10010797 [exp] 140 / 1e-38 AT4G16580 469 / 9e-165 Protein phosphatase 2C family protein (.1) Lus10001655 [exp] 108 / 3e-28 AT5G66720 127 / 6e-35 Protein phosphatase 2C family protein (.1.2) Lus10030340 [exp] 44 / 5e-05 AT2G40180 160 / 7e-48 phosphatase 2C5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G282500 [exp] 422 / 3e-149 AT2G30170 382 / 1e-133 Protein phosphatase 2C family protein (.1.2) Potri.014G042800 [exp] 143 / 6e-39 AT4G16580 522 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G381000 [exp] 135 / 2e-37 AT5G66720 197 / 4e-60 Protein phosphatase 2C family protein (.1.2) Potri.005G125700 [exp] 135 / 2e-36 AT4G16580 373 / 3e-126 Protein phosphatase 2C family protein (.1) Potri.007G028900 [exp] 129 / 3e-34 AT5G66720 405 / 1e-139 Protein phosphatase 2C family protein (.1.2) Potri.011G102200 [exp] 125 / 3e-34 AT4G16580 191 / 4e-58 Protein phosphatase 2C family protein (.1) Potri.011G013000 [exp] 122 / 6e-33 AT4G16580 175 / 6e-52 Protein phosphatase 2C family protein (.1) Potri.009G021300 [exp] 102 / 9e-25 AT4G16580 184 / 8e-54 Protein phosphatase 2C family protein (.1) Potri.001G089201 [exp] 74 / 1e-15 AT4G16580 156 / 8e-46 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 42 / 0.0002 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF07228 [flax] [poplar] SpoIIE Stage II sporulation protein E (SpoIIE)
Representative CDS sequence Show only first row Show all	>Lus10031355 pacid=23156020 polypeptide=Lus10031355 locus=Lus10031355.g ID=Lus10031355.BGIv1.0 annot-version=v1.0 ATGGCGATTCCCGCTTTCAGAGCTTCAATCCCTCATCACTCCAATTCACAATTCCACTCCTTGCTTCCAAATTCATGGATGAGAATCGGAACTTCAACTT CAATTCCGAGGAAGAATCGGATGCTTCCTCTTGCTTCTTCATCCGATCTCAACACCCCCCGGTCAGCGGTTTCGTTCTGCGTTGGAACTCACCTGATTCC ACACCCCGATAAGGTAGAGAAAGGCGGTGAAGATGCGTTTCTCATAAGCAGCTACAATGGTGGAGTTTGTGCCATTGCTGATGGTGTCTCAGGTTGGGGG AAAAAGAATGTGGATCCTGCACTGTTTTCTCAAGAACTGATGGCAAATGCTTCGTGCTTCTTACAGGACGCAGAGGTTGATTGTGATCCTCAAGTTTTGA TTAGGAAAGCACATGCTGCTACTTCCTCAATTGGCTCAGCTACGGTCGTTGTAGCTATGCTGGAGAGAAACGGAACGCTAAAGGTTGCAAATGTTGGAGA TTGTGGACTAAAGCTCATCCGTGGAGGGCGAATAATATTCTCCACTACGCCACAAGAACACTATTTTGACTGTCCATATCAGTTGAGCTCCGAAACTGTT GGCCAAACGTATCTTGATGCTATGGTCAGCAATGTTGAAGTGATGGAGGGAGATTTTGTTGTGATGGGTTCAGACGGCCTTTTCGACAATGTTTTCGATC ACGAGATCGTTTCCACCATAGCCCGCCATGAAAATGTTACCGATACAGCCAAAGTTCATTCCGTTGATTCGAGCTATGAGTCGCCTTACGCACTGGAAGC CCGGTCCAAGGGAATTGAGGTTCCGTTGTGGAAAAGGATATTCGGCACAAGCTTACAGGCAAGACGTGGGAAGCTTGACGATATTACTGTGATAGTTGGC CAGGTTGTAAAAGCTCGCGATGGATGA
AA sequence Show only first row Show all	>Lus10031355 pacid=23156020 polypeptide=Lus10031355 locus=Lus10031355.g ID=Lus10031355.BGIv1.0 annot-version=v1.0 MAIPAFRASIPHHSNSQFHSLLPNSWMRIGTSTSIPRKNRMLPLASSSDLNTPRSAVSFCVGTHLIPHPDKVEKGGEDAFLISSYNGGVCAIADGVSGWG KKNVDPALFSQELMANASCFLQDAEVDCDPQVLIRKAHAATSSIGSATVVVAMLERNGTLKVANVGDCGLKLIRGGRIIFSTTPQEHYFDCPYQLSSETV GQTYLDAMVSNVEVMEGDFVVMGSDGLFDNVFDHEIVSTIARHENVTDTAKVHSVDSSYESPYALEARSKGIEVPLWKRIFGTSLQARRGKLDDITVIVG QVVKARDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30170			Protein phosphatase 2C family ...		Lus10031355 [exp]	0	1
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10011733 [exp]	1.0	0.9269
AT3G25470			bacterial hemolysin-related (....		Lus10002144 [exp]	2.4	0.9240
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10002414 [exp]	10.5	0.8871
AT4G37080			Protein of unknown function, D...		Lus10021756 [exp]	11.7	0.8167
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10016930 [exp]	13.2	0.8920
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10039291 [exp]	13.6	0.9138
					Lus10008697 [exp]	18.2	0.9004
AT5G48830			unknown protein		Lus10038165 [exp]	19.6	0.8984
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	20.9	0.8737
AT1G21350			Thioredoxin superfamily protei...		Lus10028617 [exp]	21.5	0.8850

Compare expression of checked genes

Lus10031355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.