Plant FIBer expression Database

Lus10031356 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G66080 325 / 4e-115 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010967
[exp]
379 / 1e-136 AT1G66080 318 / 3e-112 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G082100
[exp]
349 / 7e-125 AT1G66080 318 / 1e-112 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05603 DUF775 Protein of unknown function (DUF775)
Representative CDS sequence
>Lus10031356 pacid=23155786 polypeptide=Lus10031356 locus=Lus10031356.g ID=Lus10031356.BGIv1.0 annot-version=v1.0
ATGTTTGGAGTCGTGTTCCCCAACCGAAGCTTCCCGCTCGACATCGCCGCCTTCTCCCAAATCGACACCTTCCACTGGATCCTCGACATGAACACCTTCG
TCGGCGAGGCGTACGACGACATCCGCGAGGTATGCATCTTCCTCCTGAACAACTTCACTCTGCCGCCGGACAAAGCCCTGGCTGTCTACGTCCAGTCACC
CGGTTCATCGTTCCAGTACTGCGGCGCTGTCACGATTGCCCGTCCTTCAGCAGTCCTCTCCCTGAATTGGCCGGATCCCGGAGGCCAGCTCCAGCTCACA
GCTCCTGACGCTGCGCCCCTTACCGCCAAAATCGGCGTGTCCGTGGAGGACTTGGCGTCGCTGCAGTCGCTTGACGTGGCGGCGGAGAAGAGAATTGAGA
GGCTAGCGATGAAAGTCGGGGAGAATCTGTTTAACTATATGCAGTCGTTCTGTGGCGTGGATGGGAGTAAGCTGATTGTTCCGATGGATATATTGGATCG
CTGGTTTAAGAAGTTTCAAGAGAGGGCCAAGCGTGATCCTCAGTATTTGAAGGGATTCGAATTGTAG
AA sequence
>Lus10031356 pacid=23155786 polypeptide=Lus10031356 locus=Lus10031356.g ID=Lus10031356.BGIv1.0 annot-version=v1.0
MFGVVFPNRSFPLDIAAFSQIDTFHWILDMNTFVGEAYDDIREVCIFLLNNFTLPPDKALAVYVQSPGSSFQYCGAVTIARPSAVLSLNWPDPGGQLQLT
APDAAPLTAKIGVSVEDLASLQSLDVAAEKRIERLAMKVGENLFNYMQSFCGVDGSKLIVPMDILDRWFKKFQERAKRDPQYLKGFEL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G66080 unknown protein Lus10031356
[exp]
0 1
AT3G09350 Fes1A Fes1A (.1.2.3) Lus10003961
[exp]
1.0 0.9433
AT5G09590 HSC70-5, mtHSC7... HEAT SHOCK COGNATE, mitochondr... Lus10009039
[exp]
2.0 0.9390
AT1G61150 LisH and RanBPM domains contai... Lus10011219
[exp]
2.2 0.9278
AT3G17880 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, AR... Lus10031334
[exp]
2.4 0.9274
AT5G09590 HSC70-5, mtHSC7... HEAT SHOCK COGNATE, mitochondr... Lus10009677
[exp]
3.5 0.9286
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10009842
[exp]
3.5 0.9302
AT2G39020 Acyl-CoA N-acyltransferases (N... Lus10023533
[exp]
6.9 0.9180
AT4G02500 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARAB... Lus10037516
[exp]
6.9 0.9037
AT3G08590 iPGAM2 2,3-biphosphoglycerate-indepen... Lus10031309
[exp]
7.1 0.9062
AT2G29900 PS2 Presenilin-2 (.1) Lus10035137
[exp]
9.2 0.8766

Lus10031356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.