Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66170 563 / 0 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01810 424 / 5e-139 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G22260 314 / 3e-97 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G33420 244 / 1e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G07714 140 / 6e-38 transcription factor-related (.1) ATMG00550 112 / 8e-29 ATMG00550.1, ORF160 unknown protein AT5G23610 54 / 4e-07 unknown protein AT1G32810 52 / 1e-06 RING/FYVE/PHD zinc finger superfamily protein (.2) AT5G51330 48 / 2e-05 DYAD, SWI1 SWITCH1 (.1) AT4G10600 46 / 3e-05 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010966 [exp] 1176 / 0 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10030773 [exp] 302 / 5e-92 AT5G22260 626 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013251 [exp] 298 / 1e-90 AT5G22260 625 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10039160 [exp] 230 / 3e-65 AT1G33420 746 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013775 [exp] 204 / 4e-56 AT1G33420 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017342 [exp] 50 / 5e-06 AT1G32810 320 / 2e-92 RING/FYVE/PHD zinc finger superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G135200 [exp] 647 / 0 AT1G66170 728 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G137200 [exp] 457 / 2e-152 AT2G01810 561 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G134700 [exp] 243 / 1e-70 AT1G33420 634 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G137000 [exp] 236 / 8e-68 AT1G33420 637 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.T045600 [exp] 236 / 9e-68 AT1G33420 625 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G092000 [exp] 234 / 4e-67 AT1G33420 798 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G101300 [exp] 193 / 9e-53 AT5G22260 649 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G152600 [exp] 51 / 3e-06 AT1G32810 238 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.2) Potri.001G448900 [exp] 48 / 2e-05 AT4G10600 195 / 3e-56 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G137000 [exp] 47 / 3e-05 AT5G23610 276 / 1e-86 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10031357 pacid=23155927 polypeptide=Lus10031357 locus=Lus10031357.g ID=Lus10031357.BGIv1.0 annot-version=v1.0 ATGTTGATCCCGATTCTCGAAGTCTGCAGAAAGAGGAAGAGAATCCCTAAGTACTTCAACTTCCAAACGTTCGGCGATCCAGGCTTTCCGACCACGTTCA CCGGACCCTTCCGTGATAACATCAGAGTCTTCATCGATTCCTGCGCAGAACGAGAAGATTATGACCTGGATGGAATGCCCATCTGGTGCACTCTGCTTGT TAGTCACGATAACGTCGTCGTACCACTGTACACCGTTGAAGAGAGCGTCGATAGTTCTCAGAACCCAATCTGCCATCTTTGCAGACGCACTGGTTGGGGA AGCAACTACGTTTCCAGAAGTAAGTACCACATAATAATCCCTATCCATGGCGACTGGAACAGGCAGTTAGAAGAGGAGACGCTGAATCTCCAGACTCATC TCCTCCACGGGATGATCCACTGCAACGGTTATGGCCACTTGCTCTGCGTCAACGGAATCGACGGCGGATCAAAGCACCTCTCCGGCAGGGAGATCATGAG CCTCTGGGATCGCATCTGCGGAGCTCTTCAAGCACGATCGATCTCCGTCGAGGACATCGCCAGGAAGAAATCGATGGATCTCCGGCTGCTGTACGGCGTC GCGTACGGACACTCCTGGTTCGGGAAATGGGGGTACAGGTTCAATCGAGGAAGCTTCAGCGTATCGGAGCAGAATTACCAGAGAGCCATCGAAATCCTCA CTTCTATACAAATCGATCCGATTGTTGCAGAGCTGGAGGAAAAGAATCGAGGAGGAGACAAATTGAACCGTATAGTTCGGTATTACAGAGATCTGAGCCG TACTCAGTTGATCAAACTCGGAGAGCTCCTCAGATTCATGCTCGATTTGAAAACCTGCCGATGTGGAAGGAAGAAAGAGTCCATTCCTCCTCCTCCTCCG CCTCCTCAACGCAGCAGCTTCATCTCGCCGCCGTCGTCGTCTGATTCGCTTCCGATCAGGAATCCGTACAGAAAAGGAAAGCAGGGGCAGATCAGGTTGA GGAAATTCAGCTCCGTGATCACAACCTTGGACAGCAGATGGTCGGCGAGGAGGATGGAATTCTCCGCCGAGGTCATCGTCGAAGCTCTGAAAGAGGGGAA GAGAACCTCCGGTGAAGGGATGAGCCGGCAGCAAGTGAGGGACGCAGCTCGGATGCATGTCGGCGATACGGGACTCCTCGATTACGTCCTCAAATCAATG AACAACGTCATCATCGGAAGCTCCGTCGTCCGACGAGCTGTCAATCCTCGAACCAGAATTCTCGAGTACTCCATCTTCGACCTAGGAACTCCAGGAGAAG GGCAGAAAGCTAAGAATACTCCTAAGCTCGTGAAACCTGAAACGGTGAATTCTGCTGCAGGAATCGACCTGGAGAACGATGTGAGCTCCGTGTATACAAA CGTGCTGATCAACTGTACGGATTCCGAGCTGATGTACATCGCGACACGGACATTGCTGGACTCGAAGCAGTTTGTGAAGGAATGGCCGTTCAACCACGAA TGCGATCAGTTACTGAAGCTTCTGATCCGAGTTGTTCCAAATTCGTTCGATCTCGATACTGATCGAGACGTGAATATCAGCGAGGTGTTGGTGCTGCCGG TCCACGCTACGGTGATGGAGCTGAAGCAAGCAGTGGAGGAAGCGCTTGCTGAAACTTACTGCAGCTTGGAGAACGTGGAGGTGACGGAGATAGAAGGAAT GGAGGATGTTGAGGAAGAGGATCACGTAATGTTGCACAAGATCCAGTCCGGTTCGGAGATCGTTGTGAGAGTTTCCATCGGAGGAAGAAGAACAAATGAG CCGTTTAGATGTGGTAATGGTGGACAGTTTGAAGGAGGGGGTGAGAACTGGAGAGTGAAGTGCGAGTGCGGAGCGCAAGACGATGACGGAGAGAGGATGG TGGCTTGCGATGTTTGCGAGGTGTGGCAGCACACGAGGTGCGTCGGGATCGATGATTCAGAGAAGGCTCCGCCACTGTTTGTTTGTTCCGGGTGCTGTGT TGTTCTTCAGGAGGAAAATGCTGGTAAGGTGGAGATGATTGATTACGAGAATGATGAAGAGTATATGCTGCTGAGCGGCGGTGGAGTCGAGTTCGGAGAT TATCTCCTTTGTTGA
AA sequence Show only first row Show all	>Lus10031357 pacid=23155927 polypeptide=Lus10031357 locus=Lus10031357.g ID=Lus10031357.BGIv1.0 annot-version=v1.0 MLIPILEVCRKRKRIPKYFNFQTFGDPGFPTTFTGPFRDNIRVFIDSCAEREDYDLDGMPIWCTLLVSHDNVVVPLYTVEESVDSSQNPICHLCRRTGWG SNYVSRSKYHIIIPIHGDWNRQLEEETLNLQTHLLHGMIHCNGYGHLLCVNGIDGGSKHLSGREIMSLWDRICGALQARSISVEDIARKKSMDLRLLYGV AYGHSWFGKWGYRFNRGSFSVSEQNYQRAIEILTSIQIDPIVAELEEKNRGGDKLNRIVRYYRDLSRTQLIKLGELLRFMLDLKTCRCGRKKESIPPPPP PPQRSSFISPPSSSDSLPIRNPYRKGKQGQIRLRKFSSVITTLDSRWSARRMEFSAEVIVEALKEGKRTSGEGMSRQQVRDAARMHVGDTGLLDYVLKSM NNVIIGSSVVRRAVNPRTRILEYSIFDLGTPGEGQKAKNTPKLVKPETVNSAAGIDLENDVSSVYTNVLINCTDSELMYIATRTLLDSKQFVKEWPFNHE CDQLLKLLIRVVPNSFDLDTDRDVNISEVLVLPVHATVMELKQAVEEALAETYCSLENVEVTEIEGMEDVEEEDHVMLHKIQSGSEIVVRVSIGGRRTNE PFRCGNGGQFEGGGENWRVKCECGAQDDDGERMVACDVCEVWQHTRCVGIDDSEKAPPLFVCSGCCVVLQEENAGKVEMIDYENDEEYMLLSGGGVEFGD YLLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66170		MMD1	MALE MEIOCYTE DEATH 1, RING/FY...		Lus10031357 [exp]	0	1
AT1G76750			Protein of unknown function (D...		Lus10027057 [exp]	8.8	0.6453
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10033595 [exp]	18.9	0.6159
					Lus10007681 [exp]	31.7	0.5961
					Lus10037427 [exp]	32.3	0.6097
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Lus10011632 [exp]	100.5	0.5094
AT2G33580			Protein kinase superfamily pro...		Lus10022489 [exp]	118.2	0.5118
AT4G34540			NmrA-like negative transcripti...		Lus10040443 [exp]	118.6	0.5005
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10005108 [exp]	167.1	0.4901

Compare expression of checked genes

Lus10031357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.