Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03210 401 / 6e-140 unknown protein AT1G60790 45 / 7e-05 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010965 [exp] 618 / 0 AT3G03210 404 / 4e-141 unknown protein Lus10020802 [exp] 494 / 1e-176 AT3G03210 436 / 1e-153 unknown protein Lus10007384 [exp] 485 / 3e-173 AT3G03210 432 / 4e-152 unknown protein Lus10002776 [exp] 72 / 2e-14 AT3G54860 102 / 3e-25 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G080600 [exp] 471 / 3e-167 AT3G03210 438 / 4e-154 unknown protein Potri.017G139800 [exp] 459 / 7e-163 AT3G03210 432 / 1e-151 unknown protein Potri.010G043300 [exp] 44 / 9e-05 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.001G010900 [exp] 44 / 9e-05 AT5G06700 472 / 5e-161 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.006G193900 [exp] 41 / 0.001 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031359 pacid=23155845 polypeptide=Lus10031359 locus=Lus10031359.g ID=Lus10031359.BGIv1.0 annot-version=v1.0 ATGTTTGGCGGTATACAGCTGGGACTGTTCCTCGCCTGCATTGTGCTGTTCGTCCCCATGGTAATGGCCGGCTGGCATTTGAGCCGCAACAAGATGCTCT TCTTCAGCGGCGTTCTTTTCATTTCTCTCGCGGTATGCGTCCATCTCACTCCTTATTTCCCTTCCGTTTCCGATTTCGTCACCTCAGTCCAGTCAGTCGT CGTATTCGATAACCGTGACGATTCTTGCATCAACTTGGTAAACGACGTCGTCTGGGATGTCAAGCCTAGACCCCTGCAGGAGCAGGAGGAACAACACTCG GTAGTTTATGATATGAATTGGAGCTGGTCGAACGCTACGAAAGTGAATGGATGCGAGTTTCAGAAACTAGGTCAGACTGATATCTCGGATTTACTCAACG GATCGTGGATTGTTGTGGCAGGTGACTCTCAATCGCGGTTAGTAGTTCAGTCCTTTTTGAGTCTGGTTCTGGACTCTGAAAAGATGGAATCGATCAGAGC AGAATTGTTCAGACGGCATAGTGACTATAGCATCATTGTGGAAGAAATCGGAATGAAATTGGATTTTATTTGGGCGCCTTACGTCGTTAATCTGACAAGT ATGATGATAGAGCTTAACCAGAAGAACAGAACTTATCCTGATGTACTTGTAATGGGAGCGGGACTGTGGGATATGCTCCATGTGACGAATGTATCTCGTT ACAGTGCCAATTTGAAATCGTTAAGGAGCTCCGTGGTAAGCTCTCCGTTGAGGCATTTGTTTTGGCTTCCCATCCCGACGCTGATAAACGGGATGCTGAA CACGGAAGAAAAGAGGGAGAAGATGAGTGATGAGATGTTGCATGCTTACGATAAGGCTCTGAAAGGCAGCGAGCTGTTGCGTAAAGTTCAGTTGCTCGAT GTCCAGTCGTTGAGCTGGAATTGCGGACCGAGATGTACAGTTGACGGAATGCATTATGATGGAGCTGTTTATGAAGCGGCTGTACAGATTCTGTTGAATG CATTGCTCATAGAATCTCATCAGAAGCTTGGTGGAGCTACCTGA
AA sequence Show only first row Show all	>Lus10031359 pacid=23155845 polypeptide=Lus10031359 locus=Lus10031359.g ID=Lus10031359.BGIv1.0 annot-version=v1.0 MFGGIQLGLFLACIVLFVPMVMAGWHLSRNKMLFFSGVLFISLAVCVHLTPYFPSVSDFVTSVQSVVVFDNRDDSCINLVNDVVWDVKPRPLQEQEEQHS VVYDMNWSWSNATKVNGCEFQKLGQTDISDLLNGSWIVVAGDSQSRLVVQSFLSLVLDSEKMESIRAELFRRHSDYSIIVEEIGMKLDFIWAPYVVNLTS MMIELNQKNRTYPDVLVMGAGLWDMLHVTNVSRYSANLKSLRSSVVSSPLRHLFWLPIPTLINGMLNTEEKREKMSDEMLHAYDKALKGSELLRKVQLLD VQSLSWNCGPRCTVDGMHYDGAVYEAAVQILLNALLIESHQKLGGAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03210			unknown protein		Lus10031359 [exp]	0	1
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016897 [exp]	2.4	0.9309
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	3.5	0.9301
AT5G18520			Lung seven transmembrane recep...		Lus10025283 [exp]	3.7	0.9333
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039176 [exp]	3.7	0.9508
AT3G03210			unknown protein		Lus10010965 [exp]	4.2	0.9063
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	9.2	0.9301
AT3G51990			Protein kinase superfamily pro...		Lus10019753 [exp]	10.5	0.8937
AT4G10840			Tetratricopeptide repeat (TPR)...		Lus10017304 [exp]	13.0	0.9095
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10023348 [exp]	16.1	0.9187
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	16.3	0.9240

Compare expression of checked genes

Lus10031359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.