Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37370 347 / 9e-118 ATSRL1 PRP38 family protein (.1.2.3.4) AT2G40650 50 / 2e-06 PRP38 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010963 [exp] 445 / 2e-156 AT5G37370 446 / 1e-156 PRP38 family protein (.1.2.3.4) Lus10015203 [exp] 48 / 6e-06 AT5G37370 52 / 3e-07 PRP38 family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144121 [exp] 401 / 1e-138 AT5G37370 408 / 7e-141 PRP38 family protein (.1.2.3.4) Potri.004G075700 [exp] 393 / 1e-135 AT5G37370 411 / 4e-142 PRP38 family protein (.1.2.3.4) Potri.013G012000 [exp] 56 / 2e-08 AT2G40650 346 / 7e-118 PRP38 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03371 [flax] [poplar] PRP38 PRP38 family
Representative CDS sequence Show only first row Show all	>Lus10031361 pacid=23156026 polypeptide=Lus10031361 locus=Lus10031361.g ID=Lus10031361.BGIv1.0 annot-version=v1.0 ATGGAGGTTAAAACGAGCGGGAAGCCGATCGATACCATGCTGGAAAAGGTCCTCTGTATGAACATCCTGTCCTCCGATTACTTCAAGGAGCTTTACAGGT TAAAGACTTACCATGAAGTGGTTGACGAAATTTACAATCAAGTTGACCACGTCGAGCCGTGGATGACGGGGAACTGTCGTGGCCCGTCCACTGCCTTTTG TCTCCTGTACAAGTTTTTCACCATGAAGCTCACTGTTAAACAGATGCATGGCCTGCTGAAGCACGAGGATTCGCCTTATATTCGAGCGATTGGATTCCTC TACTTGAGATATGCCGGTGATCCCAAGGCACTATGGAGCTGGTATGAACCATATATTAAAGATGACGAGGAATTTTCTCCTGGATCCAGTGGCCGGAAAA CTACCATGGGTGTTTACGTTCGTGATCTTCTCCTCGGACAGTACTATTTCGATACCCTGTTACCCCGCATTCCTGTCCTGGTACTGCGTCAGGCCGCTTC CATTCTTGAAAAGATGAACCTACCGACAAAATCATCCGGTTCAACCGGCGATAATAACCGCCACGGGTCTGATGAGACTGCTCGGCCGCCCCCCTTCCTG AAGGGGGACTCATCGCCTGTCCGTCGAACGATACCGACACCTGCTTACGATAGAAATGCCGATGATAAGCGGAGATCTCCCAGCAGCCGTCGCAGCCAGA GCCGTGACCGAGATTATTCTGACCGGGACAGAGGCCGGGACAGAGACCGAGAGAGGGAGAGGGATAGAGAAAGGGACAGAAGGTATGATTACGAGAGGAG GTCCGGCTACGGTGACCGAGAAAGCAGAAGGGATCACGAAAGGAGGCATCACAGGGATCGTCGCAGTCGGAGCAGGAGTCGTAGCCGGAGCAGGAGCAGT GCACCGTTTGATCGCCATCCCACACCCGAACGGGATGGAGACAAGGCGAAGCAGCCGTCCACATCGAGCCAGCTTGCAAAACTAAAGGATTTGTATGGCG ATTTGACTGAGAAAAAAGGTGAAGGTGTTGGGATGGAAAGGAGCCTTATTCGAGATAGCAGCGGAGAGGAGGTGATTAGGCTGGGTGGTGGATCTGGGTG GAAGTAA
AA sequence Show only first row Show all	>Lus10031361 pacid=23156026 polypeptide=Lus10031361 locus=Lus10031361.g ID=Lus10031361.BGIv1.0 annot-version=v1.0 MEVKTSGKPIDTMLEKVLCMNILSSDYFKELYRLKTYHEVVDEIYNQVDHVEPWMTGNCRGPSTAFCLLYKFFTMKLTVKQMHGLLKHEDSPYIRAIGFL YLRYAGDPKALWSWYEPYIKDDEEFSPGSSGRKTTMGVYVRDLLLGQYYFDTLLPRIPVLVLRQAASILEKMNLPTKSSGSTGDNNRHGSDETARPPPFL KGDSSPVRRTIPTPAYDRNADDKRRSPSSRRSQSRDRDYSDRDRGRDRDRERERDRERDRRYDYERRSGYGDRESRRDHERRHHRDRRSRSRSRSRSRSS APFDRHPTPERDGDKAKQPSTSSQLAKLKDLYGDLTEKKGEGVGMERSLIRDSSGEEVIRLGGGSGWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10031361 [exp]	0	1
AT5G22040			unknown protein		Lus10008373 [exp]	2.4	0.9325
AT3G20890			RNA-binding (RRM/RBD/RNP motif...		Lus10009942 [exp]	2.6	0.9157
AT3G12620			Protein phosphatase 2C family ...		Lus10001976 [exp]	3.2	0.9062
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	3.9	0.9283
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10038108 [exp]	6.6	0.9041
AT1G03910			unknown protein		Lus10021530 [exp]	7.0	0.9369
AT1G11320			unknown protein		Lus10013574 [exp]	8.5	0.9302
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10040030 [exp]	9.0	0.8667
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019328 [exp]	12.3	0.9146
AT5G51130			S-adenosyl-L-methionine-depend...		Lus10003604 [exp]	13.9	0.8640

Compare expression of checked genes

Lus10031361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.