Plant FIBer expression Database

Lus10031363 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65720 110 / 3e-30 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010961
[exp]
303 / 2e-105 AT1G65720 82 / 2e-19 unknown protein
Lus10020795
[exp]
238 / 5e-80 AT1G65720 105 / 3e-28 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G142100
[exp]
120 / 6e-34 AT1G65720 88 / 5e-22 unknown protein
Potri.004G078500
[exp]
117 / 1e-32 AT1G65720 86 / 3e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10031363 pacid=23155949 polypeptide=Lus10031363 locus=Lus10031363.g ID=Lus10031363.BGIv1.0 annot-version=v1.0
ATGGCGTCGACTTCGAGGCATCTCGCCGGCAGCGTCCTCCTCTCCCTCGCCGTCACGATCGGATTCCTCTCCGTCGCCGTCTCTGGTGGAAGGCCCTGCA
AGACTCTCTACATCTCCTCCTACTCCGTCTCCGTCAGGCCGATTCACTCCTTCCGCTACCCCAATCCTAGCCTCGGACGCCGCTCCGCTGGATTCGTCGC
GATCTTCACCGAAATCGGCCACGCGAGCTCCTCCTCCGCATCCGACATGATCAGCGATCGCGCAGTCTTCCCCGGCGTCGAATTGGACAGTAGCCATGTC
TCCGTACGGCCGCGGTTCGTCCACCGGTTTGGGCACGATCAAAATAACCGCCACCACCAGGAGCAGGATTACGCTAGCCTTCTTCCCTTCGGCCTTTCAT
CTCACTCGATCAGCTCGCTCAGAGACCGTACCAAGGACATCCTCAGCGTGGTTGTGGCTCTGCTCTTCGGCGTCGGCTGTGGAGCCCTCACCGCCGCCAC
GATGTACCTTGTCTGGTCGCTCTTCGCCGCACGATCTGCTGCCTACTACGACGAATTGTCCGACGATGAGGACGAAGACGATGTTGTCTCCGCTAAGAAG
CTGGGATATGCACAAATTCCTGAAGCTGAGAAAGTGGCACCTGCTAAATCTGTGGTATGA
AA sequence
>Lus10031363 pacid=23155949 polypeptide=Lus10031363 locus=Lus10031363.g ID=Lus10031363.BGIv1.0 annot-version=v1.0
MASTSRHLAGSVLLSLAVTIGFLSVAVSGGRPCKTLYISSYSVSVRPIHSFRYPNPSLGRRSAGFVAIFTEIGHASSSSASDMISDRAVFPGVELDSSHV
SVRPRFVHRFGHDQNNRHHQEQDYASLLPFGLSSHSISSLRDRTKDILSVVVALLFGVGCGALTAATMYLVWSLFAARSAAYYDELSDDEDEDDVVSAKK
LGYAQIPEAEKVAPAKSVV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G65720 unknown protein Lus10031363
[exp]
0 1
AT1G75390 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) Lus10040428
[exp]
1.0 0.9504
AT3G48890 MSBP2, ATMP2, A... MEMBRANE STEROID BINDING PROTE... Lus10038356
[exp]
1.4 0.9501
AT1G03350 BSD domain-containing protein ... Lus10029636
[exp]
2.4 0.9225
AT1G32410 Vacuolar protein sorting 55 (V... Lus10006605
[exp]
3.0 0.9120
AT4G29680 Alkaline-phosphatase-like fami... Lus10032681
[exp]
4.5 0.9303
AT3G63000 NPL41 NPL4-like protein 1 (.1) Lus10021567
[exp]
4.5 0.9331
AT5G67020 unknown protein Lus10019344
[exp]
5.2 0.9393
AT5G01410 PDX1, ATPDX1.3,... REDUCED SUGAR RESPONSE 4, ARAB... Lus10036181
[exp]
6.2 0.9089
AT2G40950 bZIP BZIP17 Basic-leucine zipper (bZIP) tr... Lus10027290
[exp]
6.3 0.9153
AT5G09800 ARM repeat superfamily protein... Lus10006791
[exp]
6.5 0.9077

Lus10031363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.