Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02710 687 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010958 [exp] 919 / 0 AT3G02710 780 / 0.0 ARM repeat superfamily protein (.1) Lus10026721 [exp] 176 / 1e-52 AT3G02710 158 / 5e-47 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G076600 [exp] 699 / 0 AT3G02710 696 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08216 [flax] [poplar] CTNNBL Catenin-beta-like, Arm-motif containing nuclear
Representative CDS sequence Show only first row Show all	>Lus10031364 pacid=23155902 polypeptide=Lus10031364 locus=Lus10031364.g ID=Lus10031364.BGIv1.0 annot-version=v1.0 ATGGAATTGCCGAGTTCTCGCGGCCCCAACAACCCCAAACGGAAGCGTGAAGCCTCCTCGCCTCCTAGGTCCCGACCGCCGCCGAATTTCTACGACAACG ATGACGAAGCCGGCGGAGTTGTTGATACTAACAACAACGGCAACGATGTCGATCTCAGTCTGCTGGAAGCTGTGGAGAAGTCACAGAACGTCGTCGAGGC CTTAGACAACCGTACATTGAAGAAGCTAGTTCTCTCCTTCGAGCGGCGGTACAAGGAGAACATTGAGGCTCGACTCAAGTATCCTGACCAGCCGGATCGG TTTTCCGATTCCGAGGTGGAACTCCATTTGGAGCTCGAGAAGCTCAGAGTTCTCGCCGGAGGGCCTGAGCTGTATCCGGACCTCGTCGGTCTTGGCGCGA TTCCATCTATCTTAGGACTTCTCTCGCATGACAACACTGACATCGCGATCGATGTGGTGCAGTTGCTCCAGGATCTAACCGACGAGGACGTGCTGGAGGA CAACGACGAGCCGGCTAAGGTTCTCGTGGATGCGCTTGTGGAGAACAATGTGTTGGAGCTTTTGGTTCAGAATATGCAGAGGTTGTCCGATACCGATCCT GATGAGATGGCGGCAGTTTACACTTCGCTCGCCACGATTGAGAATCTGATTGAGGTGAAGCCGGGCGTGGCGGAGATGGTGTGCGAGAGGACGAAGCTGC TCAGGTGGCTGCTTGGGAAGATCAAAGTGAGGGAGTTCGACAGTAACAAGCAGTATGCCTCTGAGATATTGGCCATTTTGTTGCAGAATAGCGCGGCGAA TCAGAAGAAGTTGGGGCAGATGAACGGAGTGGATGCGGTTCTGCAGGCCGTGGCCATGTACAAGTCCAAGGATCCTAAGAGCTCCGATGAAGAGGAGATG GTGGAGAACTTGTTTGATTGCTTGTGTTGTTTGCTGATGCCTTTGGAGAACAAGGAGAGGTTTGTCATGGCAGAAGGTGTGGAGTTGATGATTATCATTA TGAAGCAGAAGAAGTCTGCTTACAGTTCGGCTATTAGAGCCCTTGATTTCGCCATGACAAAATATCCACCAGCTTGCGAGCGGTTTGTTGATGTTCTGGG TTTGAAGACTGCATTCGCTGCTTTCATGGACTTCCATATCTTTTGCTTACAGATTCCAGTGAGCAAGAAGAATAAGAAGGAAAGCTACCAAGAGGAGTTA GAAGAGCGGATTATTTCCCTAATTGCATCATTACTTGGCGGAATTTTGAGAGGTACAAGAAGGGGAAGAGCGCTAAGTAAGTTTGTGGAGAATGAGTATG AGAAAATAGATCGACTTATGGAGCTGTATATCAGATACTCGAACAGGGTAAAGTCGGAGACTGAAAGAATGGACGAGCTTAATATGGATGATATGGAGAT GGACGATGACGAAAGATACAATAGAAAACTCGGATCTGGACTCTATACCCTCCAGTTGATAGCGATCATTCTGGGTCACCTCTGGTGTTCCGAGCACAAA AGTATGAGGGCGAGGATTGAGCTACTACTGAAGCAGTACAACCTCAGCAAGCAGGACGTTAAAGATGTTCTTCAGGAATATCATGACAACATCGGGGACC TGGACGGGGCGGAAGAGAAAGAGCGAGCACAAACGAGGATACTCAAGTTCATATCTTCTCTCTGA
AA sequence Show only first row Show all	>Lus10031364 pacid=23155902 polypeptide=Lus10031364 locus=Lus10031364.g ID=Lus10031364.BGIv1.0 annot-version=v1.0 MELPSSRGPNNPKRKREASSPPRSRPPPNFYDNDDEAGGVVDTNNNGNDVDLSLLEAVEKSQNVVEALDNRTLKKLVLSFERRYKENIEARLKYPDQPDR FSDSEVELHLELEKLRVLAGGPELYPDLVGLGAIPSILGLLSHDNTDIAIDVVQLLQDLTDEDVLEDNDEPAKVLVDALVENNVLELLVQNMQRLSDTDP DEMAAVYTSLATIENLIEVKPGVAEMVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSAANQKKLGQMNGVDAVLQAVAMYKSKDPKSSDEEEM VENLFDCLCCLLMPLENKERFVMAEGVELMIIIMKQKKSAYSSAIRALDFAMTKYPPACERFVDVLGLKTAFAAFMDFHIFCLQIPVSKKNKKESYQEEL EERIISLIASLLGGILRGTRRGRALSKFVENEYEKIDRLMELYIRYSNRVKSETERMDELNMDDMEMDDDERYNRKLGSGLYTLQLIAIILGHLWCSEHK SMRARIELLLKQYNLSKQDVKDVLQEYHDNIGDLDGAEEKERAQTRILKFISSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02710			ARM repeat superfamily protein...		Lus10031364 [exp]	0	1
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10027545 [exp]	4.9	0.9015
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10030269 [exp]	8.9	0.8806
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	9.1	0.8915
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10028930 [exp]	13.4	0.8594
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	18.3	0.8735
AT4G22860			Cell cycle regulated microtubu...		Lus10007022 [exp]	18.7	0.8652
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	18.7	0.8903
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10034199 [exp]	20.0	0.8664
AT1G19990			unknown protein		Lus10033141 [exp]	22.3	0.8726
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	26.2	0.8682

Compare expression of checked genes

Lus10031364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.