Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17310 650 / 0 AtUGP2, UGP2 UDP-glucose pyrophosphorylase 2 (.1.2) AT3G03250 650 / 0 AtUGP1, UGP1, UGP UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010957 [exp] 797 / 0 AT3G03250 676 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1) Lus10007370 [exp] 721 / 0 AT5G17310 785 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Lus10020788 [exp] 719 / 0 AT5G17310 781 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Lus10041971 [exp] 289 / 4e-91 AT5G17310 332 / 6e-107 UDP-glucose pyrophosphorylase 2 (.1.2) Lus10031368 [exp] 74 / 4e-16 AT3G03250 49 / 3e-08 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144700 [exp] 661 / 0 AT5G17310 782 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Potri.004G074400 [exp] 655 / 0 AT5G17310 759 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Potri.013G070001 [exp] 315 / 3e-101 AT3G03250 375 / 9e-124 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1) Potri.004G074750 [exp] 223 / 7e-72 AT5G17310 222 / 2e-72 UDP-glucose pyrophosphorylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01704 [flax] [poplar] UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence Show only first row Show all	>Lus10031365 pacid=23155831 polypeptide=Lus10031365 locus=Lus10031365.g ID=Lus10031365.BGIv1.0 annot-version=v1.0 ATGGCTGTCGCTACCGAGAGACTGTCCGCCTTGGAACCTGCCGTAGCCGCTCTCGATCAGATCAGGGAGAGCGAGAAGAATGGCTTCATCAGCCTCGTCT CCCGCTATCTCAGTGGTGAAGCTGACCAGGTGGAATGGAGTAAGATTAAGACACCTACCGATGAGATTGTAGTTCCCTACGACACATTGACTCCTCTCTC CGATGATCCAGCGGAAGCCAAGAGTCTTCTTGATAAGCTGGTTGTCCTAAAGCTGAATGGCGGTTTGGGTACAACGATGGGCTGCACCGGGCCTAAATCT GTGATTGAAGTCCGTAATGGATTGACGTTCCTTGACCTCATTGTCATGCAGATTGAGAATCTCAATAACAAATTCGGATGTAAGGTTCCTCTGCTTTTGA TGAACTCATTCAACACCCATGATGATACATCGAAGATTGTTGAGAAGTACACAAAAGCAAATGTAGAGATCCATACATTTAATCAGAGTCAGTACCCTCG TGTAGTTTCTGAGGATTTCTTGCCTTTGCCAAGCAAGGGACATGCAGGCAAGGATGGATGGTACCCTCCTGGACATGGTGATGTTTTTCCATCCTTGAAG AACAGCGGCAAGCTTGATATATTGTTGTCTCAGGGTAAAGAGTATGTGTTCGTTGCCAACTCCGACAACCTTGGAGCTGTCGTAGATTTGAAGATTTTAA GTCACCTGATCAGAAACAAGAATGAGTACTGCATGGAGGTTACACCCAAAACCTTGGCCGATGTCAAGGGTGGTACCCTCATTTCTTATGAAGGGAAAGT TCAGCTTCTGGAGATAGCACAGGTCGCCGATGAGCATGAAGTTGATGGCATCAAGGTTCTTCAGCTAGAAACAGCAGCTGGTGCAGCAATCAAGTTCTTC GACAAGGCAATCGGCATAAACGTTCCTCGCTCACGCTTCCTTCCTGTCAAGGCAACTTCAGATTTGCTCCTTGTGCAGTCTGACCTCTACACCGTTGTGG ATGGGTACGTCACTCGCAATGACGCGAGAATGAATCCTCAGAATCCCTCCATTGAACTCGGCCCAGAGTTCAAGAAGGTTGCCGATTTCTTGGGGCGGTT CAAGTCGATCCCCAGCATTATTGAGCTCGATTCCGTCAAGGTTGCCGGCGACGTATGGTTCGGCATCGGAATTAAGCTCAAGGGGAAGGTGACCGTAACA GCTGGGGATAAGTTGGAAATACCCGACCATTCTGTCATCGAGAACAAGGTGGTGTTAAAAGCAACGTTAAGTAACCGGAAGTAA
AA sequence Show only first row Show all	>Lus10031365 pacid=23155831 polypeptide=Lus10031365 locus=Lus10031365.g ID=Lus10031365.BGIv1.0 annot-version=v1.0 MAVATERLSALEPAVAALDQIRESEKNGFISLVSRYLSGEADQVEWSKIKTPTDEIVVPYDTLTPLSDDPAEAKSLLDKLVVLKLNGGLGTTMGCTGPKS VIEVRNGLTFLDLIVMQIENLNNKFGCKVPLLLMNSFNTHDDTSKIVEKYTKANVEIHTFNQSQYPRVVSEDFLPLPSKGHAGKDGWYPPGHGDVFPSLK NSGKLDILLSQGKEYVFVANSDNLGAVVDLKILSHLIRNKNEYCMEVTPKTLADVKGGTLISYEGKVQLLEIAQVADEHEVDGIKVLQLETAAGAAIKFF DKAIGINVPRSRFLPVKATSDLLLVQSDLYTVVDGYVTRNDARMNPQNPSIELGPEFKKVADFLGRFKSIPSIIELDSVKVAGDVWFGIGIKLKGKVTVT AGDKLEIPDHSVIENKVVLKATLSNRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031365 [exp]	0	1
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10040268 [exp]	2.6	0.9098
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10010957 [exp]	5.1	0.9089
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009247 [exp]	6.3	0.8619
AT5G04060			S-adenosyl-L-methionine-depend...		Lus10027266 [exp]	6.7	0.8995
AT1G51540			Galactose oxidase/kelch repeat...		Lus10033376 [exp]	6.8	0.8118
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	10.0	0.8979
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002568 [exp]	10.8	0.8616
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008042 [exp]	11.0	0.8034
AT3G42050			vacuolar ATP synthase subunit ...		Lus10005658 [exp]	11.7	0.8411
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	12.2	0.8880

Compare expression of checked genes

Lus10031365 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.