Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66120 86 / 1e-20 AMP-dependent synthetase and ligase family protein (.1) AT1G65890 85 / 2e-20 AAE12 acyl activating enzyme 12 (.1) AT1G68270 82 / 2e-19 AMP-dependent synthetase and ligase family protein (.1) AT1G65880 82 / 3e-19 BZO1 benzoyloxyglucosinolate 1 (.1) AT1G21530 69 / 7e-15 AMP-dependent synthetase and ligase family protein (.1.2) AT1G77240 69 / 7e-15 AMP-dependent synthetase and ligase family protein (.1) AT1G21540 69 / 1e-14 AMP-dependent synthetase and ligase family protein (.1) AT5G16340 68 / 2e-14 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 68 / 2e-14 AAE5 acyl activating enzyme 5 (.1) AT1G75960 64 / 4e-13 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010956 [exp] 131 / 6e-37 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10007369 [exp] 87 / 3e-21 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10020787 [exp] 75 / 8e-17 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10013773 [exp] 68 / 1e-14 AT5G16370 422 / 1e-146 acyl activating enzyme 5 (.1) Lus10039161 [exp] 68 / 2e-14 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10028375 [exp] 59 / 3e-11 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10012266 [exp] 59 / 4e-11 AT5G16370 733 / 0.0 acyl activating enzyme 5 (.1) Lus10016011 [exp] 56 / 3e-10 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10037734 [exp] 55 / 6e-10 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G082000 [exp] 85 / 2e-20 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.006G036200 [exp] 83 / 1e-19 AT1G66120 668 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138451 [exp] 82 / 2e-19 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.006G036300 [exp] 81 / 4e-19 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.016G034800 [exp] 79 / 2e-18 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138350 [exp] 78 / 6e-18 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.019G068100 [exp] 69 / 6e-15 AT5G16340 778 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G067900 [exp] 69 / 7e-15 AT5G16340 777 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G068001 [exp] 69 / 8e-15 AT5G16340 775 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.013G096200 [exp] 69 / 1e-14 AT5G16340 779 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031366 pacid=23156022 polypeptide=Lus10031366 locus=Lus10031366.g ID=Lus10031366.BGIv1.0 annot-version=v1.0 ATGCCTCATTCCGTATGGGGGGAGAGCCCCTGTGCTTTCGTGGCGGTTTCGGCCGAAACCGCAGCGGAGGAAGGGGAGATATTGGCGTTTTGTAAGGAGA ATATGGCGCGGTTCATGGTGCCGAAGAAGGTGGTGTTTATGGATGTGGTGCCGAGGAATGGGAATGGGAAGTTTATGAAGGTGGAGCTTAGGGAGATGGC GAGGAGATTGGTTGCGGCGGAGGAGGAGAAGAAGGCGGCTGGCGGCGGTGGAGGAGGAGGTAATGGGAAGTTGGCCGGAGGAGGATGTGGCTCCGATGAG CAGATACTTGCTATGTCTCGTCTTTGA
AA sequence Show only first row Show all	>Lus10031366 pacid=23156022 polypeptide=Lus10031366 locus=Lus10031366.g ID=Lus10031366.BGIv1.0 annot-version=v1.0 MPHSVWGESPCAFVAVSAETAAEEGEILAFCKENMARFMVPKKVVFMDVVPRNGNGKFMKVELREMARRLVAAEEEKKAAGGGGGGGNGKLAGGGCGSDE QILAMSRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66120			AMP-dependent synthetase and l...		Lus10031366 [exp]	0	1
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036725 [exp]	3.0	0.9417
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	4.0	0.9298
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10040906 [exp]	4.4	0.8817
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10037209 [exp]	5.3	0.9329
AT3G27220			Galactose oxidase/kelch repeat...		Lus10014602 [exp]	6.0	0.8828
AT2G27410	B3		Domain of unknown function (DU...		Lus10035394 [exp]	6.7	0.8855
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	7.9	0.9323
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10017436 [exp]	8.5	0.8980
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007875 [exp]	9.8	0.8878
AT1G14550			Peroxidase superfamily protein...		Lus10009898 [exp]	15.9	0.9038

Compare expression of checked genes

Lus10031366 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.