Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65890 532 / 0 AAE12 acyl activating enzyme 12 (.1) AT1G65880 531 / 0 BZO1 benzoyloxyglucosinolate 1 (.1) AT1G66120 523 / 0 AMP-dependent synthetase and ligase family protein (.1) AT2G17650 426 / 2e-144 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 423 / 4e-144 AAE1 acyl activating enzyme 1 (.1.2) AT5G16340 413 / 2e-140 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 411 / 1e-139 AAE5 acyl activating enzyme 5 (.1) AT1G68270 404 / 8e-137 AMP-dependent synthetase and ligase family protein (.1) AT3G16910 397 / 5e-134 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G75960 388 / 1e-130 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010956 [exp] 794 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10020787 [exp] 705 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10007369 [exp] 700 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10016011 [exp] 447 / 2e-153 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10028375 [exp] 432 / 1e-146 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016870 [exp] 423 / 7e-144 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 419 / 2e-142 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037734 [exp] 414 / 2e-140 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016869 [exp] 414 / 3e-140 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G082000 [exp] 646 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138451 [exp] 643 / 0 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138350 [exp] 642 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.016G034800 [exp] 615 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036300 [exp] 611 / 0 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036200 [exp] 598 / 0 AT1G66120 668 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G250700 [exp] 459 / 4e-158 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.002G010600 [exp] 453 / 7e-156 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 434 / 1e-147 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G148500 [exp] 417 / 7e-142 AT5G16370 760 / 0.0 acyl activating enzyme 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10031367 pacid=23155936 polypeptide=Lus10031367 locus=Lus10031367.g ID=Lus10031367.BGIv1.0 annot-version=v1.0 ATGGATGGGCTTCCGAAATGCGATGCTAACTACGTGGCTCTAACCCCGATCACCTTCCTCAAACGTGCTTCCCAAGTCTACTCAAACCGCACCTCTCTCA TCTACAACGGCACCCACTTCACATGGTGGCACACCTACTCGCGTTGTCGCCGCCTCGCCTTTTCTCTTCGAAACTCTCTCAACGTCGCTAAAAACGATGT CGTTTCAGTCCTGGCTCCGAATATCCCCGCGTTGTACGAGATGCACTTTGCGGTCCCCATGGCGGGCGCGGTCCTCAACGCCATCAACACGAGAGTCGAC GCCGGTACTATCGCCACCATTCTTGCCCACTCTGAGGCCAAGCTCTTTTTCGTCGACTTCGATTTCGTCCCCTTGGCAAAGAAAGCACTCGAGCTGCTAG CCGCCAACGGTACTGGTATGGTACCGGTGGTGGTGGTGATCGACGACTTGGACTCCCCAACTGGAGTCCATGAGCATCAACTCGAGTATGAGCAGCTGGT TCTGAACGGGGACCCTGACTTTGTCCCGGAAGAGATCAGGGACGAGTGGGACCCTATAAGTCTGAACTACACCTCGGGGACCACTTCATCTCCAAAAGGT GTGGTGTATAGCCACAGAGGAGCGTACCTCAGCACGATGAGCTTGATAATGGGATGGGAGATGGGTACTTCTCCGGTGTACTTATGGTCCCTCCCTATGT TCCACTGTAACGGGTGGACATTCACATGGGGGATCGCGGCTCGCGGAGGTACCAACGTGTGCATCCGCGAGACGACAGCTATCGAGATCTACCGCAACAT TGCGATCCACAAGGTCACCCATATGTGTGCCGCACCGATAATCTTCAACATCATCCTCGCAGCAAAACCCGACGAGGTTTTCCAGCTCGAATCTCCGGTC AACGTCCTCACCGGAGGAGCCCCACCGCCGGCTTCATTACTCGAAAAAATCGAGCCGATGGGGTTCCACATCACCCACGCCTACGGTCTGACCGAAGCCA CGGGCCCCGCTCTAGTATGCGAGTGGCAATCCAAGTGGGACAGGCTGTCAAGCGTTGACCGAGGAAAGTTAAAAGCCAGGCAAGGAGTCAGCATCTTAGG TCTCGCTGACGTGGACGTGAAAGATTTAAAAACCATGAAAAGCGTGCCACGTGACGGACAGACAATGGGAGAGATCGTCCTACGTGGAAGCAGTATCATG AAAGGCTACTTCAAAGATCCCAAAACGACGTCGGAGGCTTTTGTAAATGGAGGGAGATGGTTTGCCACGGGGGATGTCGGTGTGTCCACAAAGATGGTTA CGTGGAGATCAAGGATAGGTCGAAGGACGTCATCATCTCCGGCGGCGAGAATATAA
AA sequence Show only first row Show all	>Lus10031367 pacid=23155936 polypeptide=Lus10031367 locus=Lus10031367.g ID=Lus10031367.BGIv1.0 annot-version=v1.0 MDGLPKCDANYVALTPITFLKRASQVYSNRTSLIYNGTHFTWWHTYSRCRRLAFSLRNSLNVAKNDVVSVLAPNIPALYEMHFAVPMAGAVLNAINTRVD AGTIATILAHSEAKLFFVDFDFVPLAKKALELLAANGTGMVPVVVVIDDLDSPTGVHEHQLEYEQLVLNGDPDFVPEEIRDEWDPISLNYTSGTTSSPKG VVYSHRGAYLSTMSLIMGWEMGTSPVYLWSLPMFHCNGWTFTWGIAARGGTNVCIRETTAIEIYRNIAIHKVTHMCAAPIIFNIILAAKPDEVFQLESPV NVLTGGAPPPASLLEKIEPMGFHITHAYGLTEATGPALVCEWQSKWDRLSSVDRGKLKARQGVSILGLADVDVKDLKTMKSVPRDGQTMGEIVLRGSSIM KGYFKDPKTTSEAFVNGGRWFATGDVGVSTKMVTWRSRIGRRTSSSPAARI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10031367 [exp]	0	1
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10008579 [exp]	8.1	0.8660
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036725 [exp]	11.1	0.8852
AT5G08460			GDSL-like Lipase/Acylhydrolase...		Lus10028685 [exp]	14.2	0.8801
AT1G65890		AAE12	acyl activating enzyme 12 (.1)		Lus10010956 [exp]	16.4	0.8211
AT4G05030			Copper transport protein famil...		Lus10025179 [exp]	17.1	0.8037
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10010870 [exp]	20.2	0.8809
AT1G66120			AMP-dependent synthetase and l...		Lus10031366 [exp]	22.3	0.8517
AT5G42740			Sugar isomerase (SIS) family p...		Lus10007154 [exp]	24.0	0.8689
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	27.8	0.8243
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	32.5	0.8316

Compare expression of checked genes

Lus10031367 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.