Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54230 630 / 0 SUA suppressor of abi3-5 (.1.2) AT5G54580 54 / 3e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 52 / 1e-07 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G26610 54 / 3e-07 D111/G-patch domain-containing protein (.1.2.3) AT5G64200 52 / 9e-07 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT1G18630 50 / 9e-07 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT4G00830 52 / 2e-06 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT2G37510 49 / 2e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G08535 48 / 2e-06 D111/G-patch domain-containing protein (.1.2) AT2G27330 48 / 2e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010955 [exp] 1285 / 0 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2) Lus10014802 [exp] 64 / 2e-10 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 63 / 5e-10 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10031446 [exp] 57 / 2e-08 AT5G26610 357 / 1e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10001513 [exp] 56 / 8e-08 AT5G26610 356 / 6e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10023802 [exp] 52 / 1e-06 AT5G64200 217 / 1e-68 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10003957 [exp] 52 / 1e-06 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10023758 [exp] 49 / 2e-06 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003980 [exp] 49 / 3e-06 AT2G37510 169 / 1e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138500 [exp] 810 / 0 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.004G081800 [exp] 448 / 2e-140 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.017G138401 [exp] 209 / 5e-60 AT3G54230 166 / 1e-45 suppressor of abi3-5 (.1.2) Potri.011G130300 [exp] 55 / 2e-08 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 54 / 3e-08 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G165400 [exp] 56 / 5e-08 AT5G64200 202 / 2e-63 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.002G095800 [exp] 53 / 3e-07 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.013G002100 [exp] 53 / 5e-07 AT5G26610 289 / 1e-97 D111/G-patch domain-containing protein (.1.2.3) Potri.006G208500 [exp] 50 / 6e-07 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G023800 [exp] 52 / 8e-07 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10031369 pacid=23155885 polypeptide=Lus10031369 locus=Lus10031369.g ID=Lus10031369.BGIv1.0 annot-version=v1.0 ATGGATCCCGGTCGCTTTGGTCACCAGCAAGGATGGGATAATAACAGCGCTCTGGACGGGAATGGTGCTGTTCATGCTTCCAATTACCGGGGTGGTGGTT CATATGATGAGAGGAGGTTTCCTGATGAACGACACTCCAGGGGAAGTGCATTCCACAGAGATGAAAGCTACCAAGACGCAAGTAATGAAGGGGTTTGGAC TCAATCAAGGCAAAGTTATGGAGATGAATATTCTCATGAGAGGGAGCCGAGAAGACGAGAAAAAGCAGCATACATGGACTCTTATGATGAGATGGATGGT TATCGTGAAAGAGGGCCTGGTTCGTATCACGATCTTGATAGGTTTCAGGATGATTACAAAAGCGTCGAAGACTACCGTGATCATGAATATAGCAGGCCTG CTAGGATCGGAGGACGTGATCGGGATGACTACACATATGATGATTATGACTACAGGTCACATGGATCTCATCATTCTAGGGAAAGTAGCCGAGACAGAGA TTACGATTATGGTCGACGCAGCAGCCATGATTCAGACTATGACAGAGGCAGCAGCAGAAGAGATGGAAGTTGGAGGAGACGTGAATCCCGTGACCGAGAA CGTGATAGGACAGGGTCAAGCCATGATAGAGATCAGAGTCCACGGAGGTTGCATGAACGTTCCCGGTCTTGCGGACACGAGGATCGTCCTAGATCAAGAT CCCCTCGAGGTCGGAGTTATAGTAGGAGTCAACGAGAGGATAGCTATGAGGATGGTCAGTATGACAGGTTCGACAGGTGGAGGGATCATGATGATAGACA CCAGAGAGGGAATTATGATGTGGCCCCGTCAGCAACTGTAGTTGTGAAAGGTCTGTCCGAGAAGACAACTGAGGAAGATCTAAATCAGATGCTCGCTGAA TGGGGGCCCCTTCGCCATGTACGTGTTATCAGAGAGCGCAATTCTGGAATCTCTCGTGGATTTGCATTCATTGATTTCCCTTCCGTGGAAGCAGCACGAG CAATGATGGATAAAATTGGGGAGGAGGGTCTTGTACTAGATGGAAGAAAGGTTTTCTTTGTGTACAGTAGTAGGCCAACTAGTGGGGGAGGTGGGCATTA TGGTCAAGAGAATAGGATAAGATCAGGTCAAAGTAACCATAGAAGCACCACCGTTCCTTCTGATTGGGTTTGCATTATTTGTGGATGTGTCAACTTTGCA CGTCGAATGTCATGTTTCCAGTGTAATGAGCCCCGGACAGATGATGCTCCGGCAGCAGATATGGCTTTATCCAATGGGACATCCTTAGGGAGGAAAGGGT TGGAGGCAGGTCCCACCCATGTCCTGGTTGTTCGTGGACTTCATGAGAATGCTGATGAGGAAATGCTTCGGTATGAATTCTCCAAACATGTTCCAATTAA GGATCTTCGCCTAGTTAGAGATAAATTTACTCATGTTTCAAGGGGATTTGCATTTGTTCACTTCCATTCGGCGGAAGGCTCAGTGACTGACATGTCTTGT CTTGACTTCCGACTTGTTTTTCAGGTAGCGGATGCTACTAAAGCTCTTGAAGCAACTAATGGAATGACTCTTGATAAGAATGGACAAGCTTTAAGAGTTG CATATGCAAAGAGCATTCTTGGTCCTGGTTCTGGAACATCTGGAGCAATGCAGCCAAGTAGCCTAGCAGCTGCGGCAATTGAGGCTGCTTCTTTCGCACA ACAGTATCCTATGTTCTACTCGTGTCTTTACTATGATGGGAAGAATGGTACATGGTACTCGTACGATGACCAATCTCAGCAGTACATTCCTTGCACGGAT CAGAACGATGGCAAAAAGTCTGGGAAAGAGTCTGCAAATTCCAACTCGGCTGATGGTTCTCATAACAGAAAAGCTGTTATCTCTGCACCTGCTGCTACCA TTACCTCAGTTGAGAAAGCTGGCTCTTTGTCTGATGCGGTCCAGGCAGCTGCCGAAGCAGCACTAGCTGCAGAGAAGAAAGAGAAGGATAAGGCGAAAGA GATAAGACTTGCATCAAAAAGCAGCATTTTGGCTAACAAGAAGAAGATGAACAACGTATTGACTAAGTGGAAGCAGAGGAGTAACGAAGGGCAAGCAACC CGAGTGGCTCTCGATGATCAGTCAACCGGTTCAGTTGAAAATAAGCTTCTTTCTGCTGGATCTTCTATTAAAAGTAATTTCAAATCAGATTCAATTATGC CAAAGGAGAATCCTATCTCAAGTCTAGGCCTCGAAGCCGTGGCACCAGCTGAACAGTTTGTTGGTTTAGAGACTCCAGTTAAGTCAGGGGGGAGTTTAAT GGGTGTGATAAGAGGTTCCGGAAGAGGGGTTGTCAAATCGGATATGGGACCACCAGGCGGAATTAGATATACTAATGCTGCCAGTGTTTCAAGTGCATCG TTGAGTGTGGATACGTCCACTGTTACCTCATTCAGAACTGATGCATCTGCGTTGGGTTCTTACTCTACATCTTCAGTAACTGGTAGTGGTAAGAGGAGGT TTTCGGAAATGCCCCTTCCCTCCGGTTCCGCAAACAAGGAACCGAGTGTTACTTACAGAGACCGTGCAGCTGAAAGGAGGAGTCTATATGGCTCGTCTTC TGTTGGTGATGACCTATCAGATGCTGGAGTTGGAAGCTCAGAGATTATTTGTTCCTCATCTGGCTACTTCCAAGATCGTGATTCTGCTTTGAGAAAGGAT TCAATGCCTTTCCCTCCTGGCGTTGGGGGACGTGGGAGTGGGACAGGAGATGCAAACGTCAGTGTTCAGAGTTACGAGGTGATTACAAAAGAGAAGGCTA TAGATGAAAGCAATGTGGGGAATCGCATGCTTCGGAATATGGGCTGGCACGAAGGCTTGGGATTGGGAAAGGACGGAAGTGGAATTGTCGAGCCGGTACT AGCACAGGCATCAGAACACAGAGCAGGACTTGGGAGACAGCAGAAGAAGTTGGATCCAGCTCTTGAAGTGCAGGCTGGTGATAGCTACAAGACTCTGATT CACAAAAAGTCCATCGCCAGATTCCGCGAGATGTCCGAGACCGAGGCGCCCTGA
AA sequence Show only first row Show all	>Lus10031369 pacid=23155885 polypeptide=Lus10031369 locus=Lus10031369.g ID=Lus10031369.BGIv1.0 annot-version=v1.0 MDPGRFGHQQGWDNNSALDGNGAVHASNYRGGGSYDERRFPDERHSRGSAFHRDESYQDASNEGVWTQSRQSYGDEYSHEREPRRREKAAYMDSYDEMDG YRERGPGSYHDLDRFQDDYKSVEDYRDHEYSRPARIGGRDRDDYTYDDYDYRSHGSHHSRESSRDRDYDYGRRSSHDSDYDRGSSRRDGSWRRRESRDRE RDRTGSSHDRDQSPRRLHERSRSCGHEDRPRSRSPRGRSYSRSQREDSYEDGQYDRFDRWRDHDDRHQRGNYDVAPSATVVVKGLSEKTTEEDLNQMLAE WGPLRHVRVIRERNSGISRGFAFIDFPSVEAARAMMDKIGEEGLVLDGRKVFFVYSSRPTSGGGGHYGQENRIRSGQSNHRSTTVPSDWVCIICGCVNFA RRMSCFQCNEPRTDDAPAADMALSNGTSLGRKGLEAGPTHVLVVRGLHENADEEMLRYEFSKHVPIKDLRLVRDKFTHVSRGFAFVHFHSAEGSVTDMSC LDFRLVFQVADATKALEATNGMTLDKNGQALRVAYAKSILGPGSGTSGAMQPSSLAAAAIEAASFAQQYPMFYSCLYYDGKNGTWYSYDDQSQQYIPCTD QNDGKKSGKESANSNSADGSHNRKAVISAPAATITSVEKAGSLSDAVQAAAEAALAAEKKEKDKAKEIRLASKSSILANKKKMNNVLTKWKQRSNEGQAT RVALDDQSTGSVENKLLSAGSSIKSNFKSDSIMPKENPISSLGLEAVAPAEQFVGLETPVKSGGSLMGVIRGSGRGVVKSDMGPPGGIRYTNAASVSSAS LSVDTSTVTSFRTDASALGSYSTSSVTGSGKRRFSEMPLPSGSANKEPSVTYRDRAAERRSLYGSSSVGDDLSDAGVGSSEIICSSSGYFQDRDSALRKD SMPFPPGVGGRGSGTGDANVSVQSYEVITKEKAIDESNVGNRMLRNMGWHEGLGLGKDGSGIVEPVLAQASEHRAGLGRQQKKLDPALEVQAGDSYKTLI HKKSIARFREMSETEAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10031369 [exp]	0	1
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	1.0	0.9163
AT5G42940			RING/U-box superfamily protein...		Lus10010036 [exp]	2.4	0.8903
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10024419 [exp]	3.9	0.8579
AT4G12750			Homeodomain-like transcription...		Lus10016078 [exp]	4.5	0.8847
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009711 [exp]	4.9	0.8893
AT3G48195			Phox (PX) domain-containing pr...		Lus10001233 [exp]	4.9	0.8729
AT3G20720			unknown protein		Lus10011166 [exp]	5.2	0.8705
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10025315 [exp]	6.3	0.8681
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10027496 [exp]	6.9	0.8771
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006095 [exp]	7.5	0.8855

Compare expression of checked genes

Lus10031369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.