Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02690 408 / 6e-141 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010953 [exp] 652 / 0 AT3G02690 423 / 5e-146 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G145300 [exp] 427 / 7e-148 AT3G02690 438 / 5e-152 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10031371 pacid=23155853 polypeptide=Lus10031371 locus=Lus10031371.g ID=Lus10031371.BGIv1.0 annot-version=v1.0 ATGGAGTGGTCATTGCTGCTACCCTCAGCCACTCATCCAATCCGTCACCGGCGGCCGATACTGCACTCCTTCACCCATTCCACCGCAGCATCCCCATATA CTCGTATTTCAACTGCCGCTCTCAATTTTCAGGTTTCAGCTCCTTCTTCCACAGCCATAACAACCCGGCCGAATCGCAGACGAACATCCGCCGCGATCAA GTGTAAACCCACCGGCGGAGGAAGCGCTAAAGACACCACCGAATTAGCCTCGCTGGATTCCGATTCTGCGCCCTCGGATGTGGAGCGCCTACTCCTCTCC GACGAAGACGGACAGCAACCACGAAGATCCACATCGGCGATTGAGAAGTTGGTGGAGACGGGAGTGTTGGTTTCTCCCTTCTTCTTCTGGGGTACCGCAA TGGTTGCGATGAAGGAGGTCATTCCCTTGACTGGTCCCTTCTTCGTCGCGTCGTTCCGTCTAATCCCGTCGGGATTCTTGCTCGTCGCCTTCGCTGCCGC CACCGGGAGGCCTTTTCCCTCCGGAGTCAACGCTTGGCTCTCCATCACACTCTTCGGCATCATTGATGCTTCTTTCTTTCAGGGATTTCTGGCTGAAGGA TTGGAGAAGACTGCTGCAGGTTTAGGCAGCGTGATTATTGACTCCCAACCTCTGACCGTTGCAGTCCTTGCAGCATTGTTATTTGGTGAATCCATTGGCC TAGTTGGGGCAATAGGGCTTTTCCTTGGTATTGTGGGACTCCTACTTCTGGAGGTTCCTGCACTTTCGTATGAAGGCACTGGTTTTTCATTATTGGGAAG TGGAGAATTGTGGATGCTTCTTGCAGCACAGAGCATGGCAGTCGGCACAGTCATGGTCCGATGGGTTTCGAAGTATTCAGATCCTGTCATGGCCACTGGA TGGCACATGGTGATTGGAGGTTTACCTCTTGTGGCTATCTCCTTCCTGAATAATGATCCTGCCTTTAATGGAAGTCTGAAGGACCTCGCTGCAAGTGACG TTGTAGCTCTACTCTACACTTCCATTTTCGGAAGTGCTGTCAGTTATGGTGTATACTACTATAATGCAACGAAAGGTAGCCTGTTGACTCTCAGCTCACT CACATTCTTAACCCCGGTGTTCGCTTCCATTTTCGGATTTCTGTATCTCAACGAGACCTTCGCCCCCGTGCAACTGGCGGGCGCAGCTGTTACCCTTGTT GCAATATACATGGTTAACTACCGCGATAAAGTCAAATGA
AA sequence Show only first row Show all	>Lus10031371 pacid=23155853 polypeptide=Lus10031371 locus=Lus10031371.g ID=Lus10031371.BGIv1.0 annot-version=v1.0 MEWSLLLPSATHPIRHRRPILHSFTHSTAASPYTRISTAALNFQVSAPSSTAITTRPNRRRTSAAIKCKPTGGGSAKDTTELASLDSDSAPSDVERLLLS DEDGQQPRRSTSAIEKLVETGVLVSPFFFWGTAMVAMKEVIPLTGPFFVASFRLIPSGFLLVAFAAATGRPFPSGVNAWLSITLFGIIDASFFQGFLAEG LEKTAAGLGSVIIDSQPLTVAVLAALLFGESIGLVGAIGLFLGIVGLLLLEVPALSYEGTGFSLLGSGELWMLLAAQSMAVGTVMVRWVSKYSDPVMATG WHMVIGGLPLVAISFLNNDPAFNGSLKDLAASDVVALLYTSIFGSAVSYGVYYYNATKGSLLTLSSLTFLTPVFASIFGFLYLNETFAPVQLAGAAVTLV AIYMVNYRDKVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02690			nodulin MtN21 /EamA-like trans...		Lus10031371 [exp]	0	1
AT5G52030			TraB family protein (.1.2)		Lus10038884 [exp]	3.5	0.9202
AT5G65840			Thioredoxin superfamily protei...		Lus10011727 [exp]	6.0	0.9226
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10000674 [exp]	6.5	0.9252
AT2G47400		CP12-1	CP12 domain-containing protein...		Lus10010006 [exp]	12.0	0.8896
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10031474 [exp]	12.0	0.9094
AT1G74730			Protein of unknown function (D...		Lus10004269 [exp]	12.6	0.9144
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042242 [exp]	14.1	0.8877
AT3G23700			Nucleic acid-binding proteins ...		Lus10022587 [exp]	14.7	0.9143
AT1G14150		PnsL2, PQL2, PQ...	PsbQ-like 1, Photosynthetic ND...		Lus10037159 [exp]	16.2	0.9104
AT4G26530			Aldolase superfamily protein (...		Lus10032956 [exp]	17.1	0.8926

Compare expression of checked genes

Lus10031371 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.