Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65710 96 / 1e-21 unknown protein AT5G37010 93 / 3e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010952 [exp] 491 / 9e-171 AT1G65710 232 / 1e-67 unknown protein Lus10020782 [exp] 154 / 2e-41 AT5G37010 191 / 1e-52 unknown protein Lus10007363 [exp] 123 / 2e-30 AT5G37010 167 / 2e-44 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G145200 [exp] 135 / 3e-34 AT5G37010 212 / 3e-59 unknown protein Potri.015G147900 [exp] 122 / 5e-30 AT5G37010 195 / 3e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031372 pacid=23155924 polypeptide=Lus10031372 locus=Lus10031372.g ID=Lus10031372.BGIv1.0 annot-version=v1.0 ATGGTCTCCGTCCCACCTACGGTCGGCTCTTCATCATCATCCAACAAAACAAATACCAACATTAACAGCAACGGCGTGGAACCTCAGCAGACGGCGGCTA ACGGAGTTAAACGGATTTCCGTGAAAAGAAACGGCGGGGAAACCGGTTTGAGAAGTGCAGCGGCGTCTCCGAGGGCGCGTTCACCTGCTAGAGGAGTTCG GGGCGACGCAGCCAATCAACAGCCATCGTTGAGCAGGAACTCGTCGAGAAAAGCAGAGCAATCACCGAAACGGAGGAACGCATTGGCGGAAATCGACCCA AGCTCGCTGGCGTATCCTCAGGCGAACGGGAACAGAGTTGTACAGGATAACAATGGTATTCAAATGGCTGCCAAAGAAACCAGCCAGAAGCCGAATCCTG AAAGCCAGAAGAAGCAATCGCTTTTGAGAAGCAGATCAGCAAGGAGATCTAGAGATCTGGACATAAATGTTGAAGCTTTACTGAATCCACAGCCGGCTTC TTACACTTCGTTGCTGCTGGAAGACATTCAAAACTTCCACCAAAAGAAGAACGACAACAATGGCGGCAGCAATCCTCCGGCAGCGCTGCAGCCGTTCCAG CTACCGGCTTGTGTGACGAAAGCGTGTTCGATAATGGAAGCAGTAGCTGATCTGAATTCCACCACAAGCTCTAACTTGTCATCCACATTGTCAGAAGATC ACCATCGCAGGGTTGGTCTTAGGCAGCCTCCACCGTTTGTTGTGGAATCTGAGGTGGTGACGTTGGATGATCTGATGGAACCAAGCTTCCACAAGTATGT AACAGTGAGAAGAGGCGGGTCGTCGTCGGAGGACATGGATAATAGGCCTGAAGAATCTTCAGGGAGCAACAGCTTTGTTGGTGGTGGAGGTAGTAGTATC CAGCAACAACAGGGGAATTCGTACAGCTCCGGGTGGGAGCCGAATTCTGCTGATTCGACTGATCGATGGAGCAACAACAATGGTAAGGAGGAAGATAAGA AGATGAATCCGAGTCCGGTTCTGGCGCCGTTGGGATTGGGAATAGGGCAGAGAGTTCATGGATTGAGTGAAAGAGCAGGAAGCAGGGAGATTGAAAGAGT AATGGAAGAGGCTAGAATGGGGTTTAGTGGAAAGGAGAATGGCAAGGGAAAGCTTGGTGGCAACAGGAGTCATCATCTACTCACTACTGCTGTTGCTTTC ACGTAG
AA sequence Show only first row Show all	>Lus10031372 pacid=23155924 polypeptide=Lus10031372 locus=Lus10031372.g ID=Lus10031372.BGIv1.0 annot-version=v1.0 MVSVPPTVGSSSSSNKTNTNINSNGVEPQQTAANGVKRISVKRNGGETGLRSAAASPRARSPARGVRGDAANQQPSLSRNSSRKAEQSPKRRNALAEIDP SSLAYPQANGNRVVQDNNGIQMAAKETSQKPNPESQKKQSLLRSRSARRSRDLDINVEALLNPQPASYTSLLLEDIQNFHQKKNDNNGGSNPPAALQPFQ LPACVTKACSIMEAVADLNSTTSSNLSSTLSEDHHRRVGLRQPPPFVVESEVVTLDDLMEPSFHKYVTVRRGGSSSEDMDNRPEESSGSNSFVGGGGSSI QQQQGNSYSSGWEPNSADSTDRWSNNNGKEEDKKMNPSPVLAPLGLGIGQRVHGLSERAGSREIERVMEEARMGFSGKENGKGKLGGNRSHHLLTTAVAF T

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37010			unknown protein		Lus10031372 [exp]	0	1
AT5G10400			Histone superfamily protein (....		Lus10031822 [exp]	2.4	0.9596
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10003904 [exp]	4.0	0.9546
AT3G02400	FHA		SMAD/FHA domain-containing pro...		Lus10018056 [exp]	5.7	0.9420
AT2G28740		HIS4	histone H4 (.1)		Lus10025964 [exp]	6.5	0.9376
AT3G27360			Histone superfamily protein (....		Lus10031252 [exp]	7.9	0.9332
AT3G53730			Histone superfamily protein (....		Lus10038481 [exp]	8.5	0.9440
AT4G40030			Histone superfamily protein (....		Lus10013946 [exp]	11.0	0.9265
AT3G46320			Histone superfamily protein (....		Lus10019956 [exp]	11.4	0.9235
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10040853 [exp]	11.6	0.9410
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Lus10022810 [exp]	12.4	0.8942

Compare expression of checked genes

Lus10031372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.