Plant FIBer expression Database

Lus10031373 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65710 69 / 5e-14 unknown protein
AT5G37010 54 / 1e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010952
[exp]
167 / 5e-49 AT1G65710 232 / 1e-67 unknown protein
Lus10020782
[exp]
72 / 1e-14 AT5G37010 191 / 1e-52 unknown protein
Lus10007363
[exp]
65 / 2e-12 AT5G37010 167 / 2e-44 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G145200
[exp]
72 / 5e-15 AT5G37010 212 / 3e-59 unknown protein
Potri.015G147900
[exp]
62 / 2e-11 AT5G37010 195 / 3e-53 unknown protein
PFAM info
Representative CDS sequence
>Lus10031373 pacid=23156039 polypeptide=Lus10031373 locus=Lus10031373.g ID=Lus10031373.BGIv1.0 annot-version=v1.0
ATGGGAGGTTGTTTCAGCAAGAAAACCGTCTCTTCCTCCGTCGTCAACAACGCCGCATCTCCTACTCCGACGACCGGCGGAGAAGAGCAGAAGAGATCCG
CCGTGTTGAAAACAGAGGTGAAGAAAGAAGTGTTATTACCGCAGGAGGAAGAGAGCTCGGGGAAGAACGAGGAGTTCGTGATTAAGCATCGGCATAGCCA
CGAAAGTAATGGTAACGCCAGGGAGAAACAGTCGTCGCCGGAGGTTTCGGAATCGGATATTGGGAAGGTGAGTACTACCACGAGTATGGCGGTGAGGACT
TCTAGCTGTACTAAAGAAGAAGTGGAAGCGATTCTGATTCAGTGTGGGAGGTTGAGCCGGAACAACTCTTTAGGAACCCCTGCCGCTGGCGGTGGTGGGG
GTTCGACGGCGGGGAGGAGGTATAGTGGGTCGAAAAGGAGCTTTGATTTCGACGAGAATTTTGAAGGGGGGTGGGGGGGAGAGAGAGAGAGGGGGGGGGG
GGGGAGGGAAGAAGAGAAGGGGCAACCCCCCCCCCAGCCGATCTAG
AA sequence
>Lus10031373 pacid=23156039 polypeptide=Lus10031373 locus=Lus10031373.g ID=Lus10031373.BGIv1.0 annot-version=v1.0
MGGCFSKKTVSSSVVNNAASPTPTTGGEEQKRSAVLKTEVKKEVLLPQEEESSGKNEEFVIKHRHSHESNGNAREKQSSPEVSESDIGKVSTTTSMAVRT
SSCTKEEVEAILIQCGRLSRNNSLGTPAAGGGGGSTAGRRYSGSKRSFDFDENFEGGWGGERERGGGGREEEKGQPPPQPI

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G65710 unknown protein Lus10031373
[exp]
0 1
AT2G20590 Reticulon family protein (.1.2... Lus10002173
[exp]
2.0 0.9671
AT2G20590 Reticulon family protein (.1.2... Lus10039890
[exp]
2.4 0.9698
AT1G15440 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN ... Lus10043473
[exp]
6.0 0.9425
AT3G51280 Tetratricopeptide repeat (TPR)... Lus10041887
[exp]
6.9 0.9665
AT3G51740 IMK2 inflorescence meristem recepto... Lus10022679
[exp]
8.9 0.9569
AT3G21620 ERD (early-responsive to dehyd... Lus10035300
[exp]
10.1 0.9499
AT1G18370 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIV... Lus10032452
[exp]
12.8 0.9533
AT5G26830 Threonyl-tRNA synthetase (.1) Lus10005351
[exp]
16.0 0.9144
AT5G04130 GYRB2 DNA GYRASE B2 (.1.2) Lus10012114
[exp]
16.2 0.9182
AT5G23910 ATP binding microtubule motor ... Lus10027488
[exp]
17.2 0.9487

Lus10031373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.