Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07650 1196 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 932 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 897 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 896 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 846 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 803 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 802 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 796 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 757 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G56130 683 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010951 [exp] 1638 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 867 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 830 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10041937 [exp] 781 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 777 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 739 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 659 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 600 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10026207 [exp] 348 / 2e-109 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G135500 [exp] 1428 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385200 [exp] 1036 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G106400 [exp] 915 / 0 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G308600 [exp] 907 / 0 AT1G07650 912 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385400 [exp] 899 / 0 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G063200 [exp] 893 / 0 AT1G29750 1019 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.001G385600 [exp] 891 / 0 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G026325 [exp] 890 / 0 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072300 [exp] 886 / 0 AT1G29750 1024 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G072566 [exp] 885 / 0 AT1G29750 1210 / 0.0 receptor-like kinase in flowers 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10031374 pacid=23155807 polypeptide=Lus10031374 locus=Lus10031374.g ID=Lus10031374.BGIv1.0 annot-version=v1.0 ATGAGGTGGTGCGTTGAGCCCGGATATACGGAGATGCAGTTCGAGACGGATGCACAAACCGTGGTCAGTGGTTTGCGGACAGGAGGTGAGGATTGGTCCG AGTTTGGTGATATTCTGCGAAGTTGTCGAGAGGTACTTGATGCATTTCCAATATTTTATGTTACGTTTGCTAGTAGAAACTGTAATGCTGTTGCGCATGA AATTGCACAACGCTCTGTTACTCAGATGGTAGCTATGGGAGGAGATGTTCCCCGATCGGAAATTGATTCCAACTATAAGCTCCACCCTTCTGAAGTGAAG GCATTGAGAGATATAGGGAAGAAACTTGGGAAGAAAGGGTGGGATTTTGGTAAAGATCCCTGCAGTGAAGAAGGGAGCTGGGATGTTAAGGATAGCAGGA AAGGGTTTGAGAACTCTGTGATTTGTGATTGTCCAGTTAGTGCAAGTGCTAGTGCTGTTGCAGTTCATGGTAGTCTCAATCTCAACAATTCCACTACTTT TGGTTCCTCCTGCCATGTTACCTCTATATTGTTGAAGTCTCAGAACTTGTCTGGAACTTTGCCTCCTGAGTTCTCTAGGCTTCGCTACCTTAAGAAACTG GAACTCAGTAAGAATATTCTGACTGGTACAATACCTCCTCAATGGGCTACCTTGCGTTTAGTCGAGCTCTATCTTATGGGAAATCGGTTATCTGGTGCAT TTCCGAAAGTCCTTACCAACATGACCACTCTCAGAAACTTGAGCATTGAAGCAAATGAATTTTCAGGACCATTACCTCCCGAAATCGGAAGAATGATCAA TATCGAGAGACTTCATATCAATTCAAATGCGTTCACTGGGAAACTGCCTGTTCAACTCTCCAAGTTGGTCAATTTGACCGATATAAGGATAAGTGATAAT AACTTCTCTGGAAAGATCCCAGATTTCATCAGCAAATTGACAAAGCTTGAAAAATTGTGGGTTGAACATTCAGCTGCTTCTCCTACTCGGCATATTCAAG GTTGCCCTATGGAAGGCCCTATACCTTCAAGCATTTCAGCCTTAACAAGTTTAACTGATCTGCGGATCACAGACCTAAAAGGTAGAGGATCTTCCTTTCC ACCACTTAGTGCAATGGAGTCTATGAAGACGCTGGTTCTACGGAACATCTTACTATCAGGAAGGATCCCGGAGTACCTGATCAAAATGAAAAAACTGAAA ACCCTTGATCTTAGCTTCAACAGCCTGACTGGAGAAATCCCGGAATCATTTGTCCTGCTCGCTAAAGTAGACATCATCTACTTAACTGGAAACAGACTCA GAGGATCTGTGCCTCAATGGATTCTAGAGAGAAACAAGATTGTGTATGTTTATCTGGTTGGCATTTTAGCTTTCTACTGGAACTTCTTGTTCTTACAACG ATTAATGAACCGTCTTTTCATGCGTAGTGACGTTTCTTACAATAACTTCACTTGGGAAAGCTCAAGTCCGACAGAATGTCCTCAAGGAAGCGTAAATTTA GTGGAGAGTTATTCCTCCTCAACAACCAAACAAAGTAGAATACATCCCTGCTTGAGACAGAAGTTTCCATGTTGCCTTTCAAGAAAAGAATATCGTTACT CGCTGCATATTAACTGTGGCGGTAAGGAAATGAACCTCAATAAGACCCTCTACCAGGCTGATAGGGAACCGAGAGGCGCTTCGATGTACTACTCCAGTCA GAATTGGGTATTCAGTAGCACTGGACACTTTGCGGATAATGATCTAGATGCTGACACCTATATTCAATACAACCACTCTGCTATATCCACCACCAACATA ATATCCGCTAATAACAACTCGGAACTCTACACAACTGCTCGTGGATCACCTATCTCGCTCACTTACTACGGTCTTTGTCTTGGCAATGGGAATTACACCG TGAGACTCCATTTCGCAGAGATTGTTTTCACGAATGACAGTTCATTCATAAGCGTTGGGAAGCGGATATTCGATGTCTATGTACAGGACAAGTTGGTCCT GAAGGATTTCAACATCGAAGCGGAAGCTGGTGGCCCTGGTAGGCCAATTGTAAAGACATACACAGTTACTATAACAAACAACACATTGAAGGTCCACTTT TATTGGGCTGGGAGAGGGACGACGGGGATACCGGTGAGAGGAGTTTATGGTCCTCTTATTTCTGCTATATCAGTCGATCCAAACTTCACTCCACCTTCAC CCGAGGATAGCAGACGGCATATCATTATCATTGCTGGAGCTGTTTCGGGAGCTCTTTCGCTTGTGCTTCTGATTTTGGGTATCCTTTGGAGAAAAGGACT GTTGGCAGGCCAAGCAGCTGAGGAGAAAGAGCTACGAGGACTACTAGACCAGCAAACGGGACTATTCGCGCTGAGACAGATAAAAGCAGCGACGAAGAAT TTCGATCCTGCAAACAAGCTTGGAGAAGGCGGTTTCGGCTGTGTTTATAAGGGTGAACTGCCAGATGGAACAGTTATTGCTGTGAAGCAGCTGTCTTCAA AATCTAAGCAAGGAAATCGTGAATTCGTCACTGAGGTCGGCATGATATCTGGAATTCAGCATCCGAACATGGTAAAGCTGTACGGATGCTGCGTTGAAGG GAACCAACTTATCCTCATATACGAGTACATGGAGAACAATTGTTTATCTCGTGCACTCTTTGCGAAGGATCCAGCATGCAGGTTAAAACTAGACTGGCCA AGTAGGCAAAAAATATGCATAGGCGTCGCTAGAGGATTGGCTTACCTCCATGAGGAATCGCGAATCAGAGTTGTGCATAGAGACATTAAGACAAGCAATG TGTTGCTTGATAAAGACCTGAATCCAAAAATCTCCGATTTCGGGTTGGCAAAGCTACACGAAGATGAAGATACCCACATCAGCACAAGAGTGGCTGGAAC CATAGGCTACATGGCTCCTGAATATGCCATGCGAGGTTGCTTGACCAGCAAGGCAGACGTTTACAGCTTTGGCGTGGTTGCTCTAGAGATCGTCAGCGGG AAGAGCAACACAAACTACCGGCCAAAGGAAGAATACGTCTATCTTCTCGATTGGGCCTATGTATTACAAGAAAGAGGATGCCTGCTGGAACTCGTCGATC CTGCATTGGGTTTGGAGTATTCGGCTGAAGAAGCGATGCTCATGCTGAATGTGGCTCTCTTGTGCACCAATGCATCGCCGAGTCTCCGGCCAACCATGTC CCAAGCGGTGAGTATGTTAGAAGGCCGAACCGCAATCCAAGACCTACTATCTGACCCTGGTTACTCCGCGAATAGAGCAAAGTACAAGGCCATAAGGAAT CACTTCTGGCAGAACCCAAGTAGGACTCAAAGCATGTCGACAGATGATGGATATACGGATTACTCGAGCCGGCATCCAGAGGTAGAAGAATCTGGGAGCT TGTTAAGAGCAGTGTCGTCGAAGACTGAGGACTAG
AA sequence Show only first row Show all	>Lus10031374 pacid=23155807 polypeptide=Lus10031374 locus=Lus10031374.g ID=Lus10031374.BGIv1.0 annot-version=v1.0 MRWCVEPGYTEMQFETDAQTVVSGLRTGGEDWSEFGDILRSCREVLDAFPIFYVTFASRNCNAVAHEIAQRSVTQMVAMGGDVPRSEIDSNYKLHPSEVK ALRDIGKKLGKKGWDFGKDPCSEEGSWDVKDSRKGFENSVICDCPVSASASAVAVHGSLNLNNSTTFGSSCHVTSILLKSQNLSGTLPPEFSRLRYLKKL ELSKNILTGTIPPQWATLRLVELYLMGNRLSGAFPKVLTNMTTLRNLSIEANEFSGPLPPEIGRMINIERLHINSNAFTGKLPVQLSKLVNLTDIRISDN NFSGKIPDFISKLTKLEKLWVEHSAASPTRHIQGCPMEGPIPSSISALTSLTDLRITDLKGRGSSFPPLSAMESMKTLVLRNILLSGRIPEYLIKMKKLK TLDLSFNSLTGEIPESFVLLAKVDIIYLTGNRLRGSVPQWILERNKIVYVYLVGILAFYWNFLFLQRLMNRLFMRSDVSYNNFTWESSSPTECPQGSVNL VESYSSSTTKQSRIHPCLRQKFPCCLSRKEYRYSLHINCGGKEMNLNKTLYQADREPRGASMYYSSQNWVFSSTGHFADNDLDADTYIQYNHSAISTTNI ISANNNSELYTTARGSPISLTYYGLCLGNGNYTVRLHFAEIVFTNDSSFISVGKRIFDVYVQDKLVLKDFNIEAEAGGPGRPIVKTYTVTITNNTLKVHF YWAGRGTTGIPVRGVYGPLISAISVDPNFTPPSPEDSRRHIIIIAGAVSGALSLVLLILGILWRKGLLAGQAAEEKELRGLLDQQTGLFALRQIKAATKN FDPANKLGEGGFGCVYKGELPDGTVIAVKQLSSKSKQGNREFVTEVGMISGIQHPNMVKLYGCCVEGNQLILIYEYMENNCLSRALFAKDPACRLKLDWP SRQKICIGVARGLAYLHEESRIRVVHRDIKTSNVLLDKDLNPKISDFGLAKLHEDEDTHISTRVAGTIGYMAPEYAMRGCLTSKADVYSFGVVALEIVSG KSNTNYRPKEEYVYLLDWAYVLQERGCLLELVDPALGLEYSAEEAMLMLNVALLCTNASPSLRPTMSQAVSMLEGRTAIQDLLSDPGYSANRAKYKAIRN HFWQNPSRTQSMSTDDGYTDYSSRHPEVEESGSLLRAVSSKTED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07650			Leucine-rich repeat transmembr...		Lus10031374 [exp]	0	1
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10025267 [exp]	1.0	0.9147
AT2G37840			Protein kinase superfamily pro...		Lus10021493 [exp]	3.5	0.8788
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	4.9	0.8986
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10006078 [exp]	7.3	0.8126
AT3G03560			unknown protein		Lus10020297 [exp]	10.1	0.8657
AT5G61910			DCD (Development and Cell Deat...		Lus10032533 [exp]	12.0	0.8319
AT5G66810			unknown protein		Lus10016766 [exp]	12.4	0.8796
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10009542 [exp]	17.2	0.8220
AT3G15160			unknown protein		Lus10019614 [exp]	24.7	0.8225
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004596 [exp]	25.7	0.8716

Compare expression of checked genes

Lus10031374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.