Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30910 559 / 0 ARPC1B, ARPC1, ARPC1A actin-related protein C1A (.1.2.3) AT2G31300 557 / 0 ARPC1b actin-related protein C1B (.1) AT3G18060 52 / 4e-07 transducin family protein / WD-40 repeat family protein (.1) AT2G26060 49 / 4e-06 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G01330 45 / 7e-05 nucleotide binding (.1.2) AT5G67320 44 / 0.0002 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT4G02730 43 / 0.0003 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G30050 42 / 0.0006 transducin family protein / WD-40 repeat family protein (.1) AT4G11920 41 / 0.001 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027252 [exp] 59 / 2e-09 AT3G18060 979 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10038960 [exp] 57 / 2e-08 AT3G18060 971 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10021059 [exp] 49 / 7e-06 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021365 [exp] 46 / 2e-05 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032444 [exp] 45 / 6e-05 AT3G18060 884 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10004167 [exp] 44 / 0.0001 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10017045 [exp] 43 / 0.0004 AT2G26060 486 / 5e-174 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10042944 [exp] 43 / 0.0004 AT3G18060 888 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10014674 [exp] 41 / 0.001 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141700 [exp] 610 / 0 AT2G30910 621 / 0.0 actin-related protein C1A (.1.2.3) Potri.015G041200 [exp] 55 / 6e-08 AT3G18060 1000 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.012G049200 [exp] 52 / 5e-07 AT3G18060 1018 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 46 / 2e-05 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G212800 [exp] 45 / 6e-05 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G221000 [exp] 45 / 8e-05 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G023800 [exp] 44 / 0.0002 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2) Potri.005G148500 [exp] 43 / 0.0002 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 43 / 0.0003 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.009G115300 [exp] 42 / 0.0007 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10031375 pacid=23155851 polypeptide=Lus10031375 locus=Lus10031375.g ID=Lus10031375.BGIv1.0 annot-version=v1.0 ATGGCCGCCATCGCCGTTCACCAGTTTTCTCAATCCATCACTTGCCACGCTTGGAGTCCCGACCGCTCCATGATCGCTCTTTGTCCCAACAATAACGAAG TTCATATCTATAAACTGATCCAGGACAAGTGGGAGAAGGTTCATGTTCTTGAAAAGCATGACCAGATTATATCTGGGATAGATTGGAGCGTCAAGTCCAA CAAAATTGTTACTGCATCTCATGACCGGAATTCATATGTTTGGAACTATGAAGGCTCGGAATGGGTACCGACCCTCGTTATCCTTAGGCTTAACCGTGCT GCGCTTTGTGTACAGTGGAGTCCTAAAGAAAACAAATTTGCTGTTGGAAGTGGAGCAAAAACTGTTTGTATATGCTACTACGAACAAGACAATAATTGGT GGGTTAGTAAACTTATCAGGAAAAGGCATGATTCCTCTGTGACAAGTGTTGCTTGGCATCCTAATAATATTTTTGTAGCGACAACTTCTACTGATGGGAA ATGCAGAGTGTTCTCCACATTTATAAAAGGCGTGGATAAGAAGGACTCGAAATCAAGCTCCTCGGCAGATTCGAAATTCGGAGAGCAAATTGTCCAACTT GATCTCTCAATCTCCTGGGCATTTGGCGTGAAGTGGTCACCAAGTGGCAAAACCTTGGCTTACGTAGGTCATAATTCAATGATTTACTTTGTGGATGAAG TTGGTCCAGCACCGTTGGCTCAAAACGTTGCACTTCGCCATTTACCACTTCGTGATGTGTTATTCATTTCTGAGAAAATGGTGATAGGGGTTGGCTTTGA CTGCAATCCCATGGTTTTCGCGGCAGATGATACAGGAATATGGACGTTTATTCGTTTCCTCGATGCGAAGAAACCAACTTCAGCAAGCCCAAAATATGGT TCTCAGTTCTCTGAAGCCTTGGGGAAATTTTACGGCGGGCAACCAAAGTCTAACGATGGCAACAGCCCTTCGAAATCACTTGGAGGTCTGTCTCGTGTTT CCGAGGTTAACTCTTGGTTGTTCTTTTACTTCCTGGGACTGAGCAGATGCATCATGCCTCTTGCTGGGAAATCACGAATAACACGCTTCAGCACTTCAGG ATTAGACGGTAGAGTGGTGGTGTGGGATCTGGAGAACCAGGAAGATTTGTTGCATACCATGTAA
AA sequence Show only first row Show all	>Lus10031375 pacid=23155851 polypeptide=Lus10031375 locus=Lus10031375.g ID=Lus10031375.BGIv1.0 annot-version=v1.0 MAAIAVHQFSQSITCHAWSPDRSMIALCPNNNEVHIYKLIQDKWEKVHVLEKHDQIISGIDWSVKSNKIVTASHDRNSYVWNYEGSEWVPTLVILRLNRA ALCVQWSPKENKFAVGSGAKTVCICYYEQDNNWWVSKLIRKRHDSSVTSVAWHPNNIFVATTSTDGKCRVFSTFIKGVDKKDSKSSSSADSKFGEQIVQL DLSISWAFGVKWSPSGKTLAYVGHNSMIYFVDEVGPAPLAQNVALRHLPLRDVLFISEKMVIGVGFDCNPMVFAADDTGIWTFIRFLDAKKPTSASPKYG SQFSEALGKFYGGQPKSNDGNSPSKSLGGLSRVSEVNSWLFFYFLGLSRCIMPLAGKSRITRFSTSGLDGRVVVWDLENQEDLLHTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Lus10031375 [exp]	0	1
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	2.0	0.8752
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10014417 [exp]	2.2	0.8483
AT1G06470			Nucleotide/sugar transporter f...		Lus10010954 [exp]	3.3	0.8759
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	3.5	0.8665
AT2G20010			Protein of unknown function (D...		Lus10034947 [exp]	3.5	0.8514
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10018854 [exp]	8.0	0.8024
AT2G28320			Pleckstrin homology (PH) and l...		Lus10016094 [exp]	8.8	0.8061
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	8.9	0.8017
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	9.2	0.8351
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Lus10002481 [exp]	11.0	0.7955

Compare expression of checked genes

Lus10031375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.