Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26750 145 / 4e-44 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019740 [exp] 258 / 5e-89 AT1G26750 168 / 2e-53 unknown protein Lus10016383 [exp] 247 / 1e-84 AT1G26750 160 / 4e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G165500 [exp] 168 / 3e-53 AT1G26750 171 / 2e-54 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031376 pacid=23155930 polypeptide=Lus10031376 locus=Lus10031376.g ID=Lus10031376.BGIv1.0 annot-version=v1.0 ATGTCGTTTATGAAGGGCGATTTGCTGTCTAGAACCAGGAGGCTTGTCAAGGGCATGGCTAAAGCCGAGCCTGTTTGGCTCAAGGCCATGGAGCAAGCAC CTCCTGCAACGTTTCCTCTGTCTAATGGAAAGATTCAGAAAATCACCCTCCCTGAACATCCTTATATAAAGAAGTTCTTCCAGAAGCACTCAGCTTTACA GCCTGAAGCTCCCGTCAGGATATCGAGTATTAATCCATCTCCAGCGCGAGCGGGTGCCGAGTTCAAGGAACACGGAGTCCGTGACGAAGATGCCATCAAT GCTGCTGATTGGGAGTATCGAACGGAGAGGAAAGCGAGAAAAGAGGCTTACGCTCGACTGAAGGAGATCGGCAGGGTTCTGGGAAAGAACCCTCCGCCAA GGCCATACCCGAAGAACAAGAAGGAGACGCAGGATGAAGAAAGGTGGCAGGGTCGTAAGCCTAGGATATTCGAGATTGTGAGGCGGCTCAAGGATGAAAT GACGGCTGACACCACCCGTGAACGTGAAAGATCCAGACGCAAGTGA
AA sequence Show only first row Show all	>Lus10031376 pacid=23155930 polypeptide=Lus10031376 locus=Lus10031376.g ID=Lus10031376.BGIv1.0 annot-version=v1.0 MSFMKGDLLSRTRRLVKGMAKAEPVWLKAMEQAPPATFPLSNGKIQKITLPEHPYIKKFFQKHSALQPEAPVRISSINPSPARAGAEFKEHGVRDEDAIN AADWEYRTERKARKEAYARLKEIGRVLGKNPPPRPYPKNKKETQDEERWQGRKPRIFEIVRRLKDEMTADTTRERERSRRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26750			unknown protein		Lus10031376 [exp]	0	1
AT2G26470			unknown protein		Lus10038230 [exp]	2.0	0.8741
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10022210 [exp]	2.0	0.8816
AT2G30260		U2B''	U2 small nuclear ribonucleopro...		Lus10026413 [exp]	3.9	0.8301
AT5G08630			DDT domain-containing protein ...		Lus10029550 [exp]	6.3	0.8184
AT3G08880			unknown protein		Lus10012504 [exp]	7.3	0.8183
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10017841 [exp]	9.2	0.7966
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10037606 [exp]	11.1	0.8248
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	13.3	0.7950
AT1G11240			unknown protein		Lus10018438 [exp]	13.3	0.8101
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10019423 [exp]	13.6	0.7692

Compare expression of checked genes

Lus10031376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.