Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20820 416 / 1e-145 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 407 / 1e-141 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT5G12940 393 / 2e-136 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 156 / 3e-43 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 153 / 4e-42 Leucine-rich repeat (LRR) family protein (.1) AT3G56370 151 / 3e-40 Leucine-rich repeat protein kinase family protein (.1) AT1G33590 147 / 8e-40 Leucine-rich repeat (LRR) family protein (.1) AT5G44700 149 / 2e-39 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20140 149 / 3e-39 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G08850 147 / 6e-39 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010949 [exp] 640 / 0 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10037705 [exp] 504 / 5e-180 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10031824 [exp] 416 / 1e-145 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 377 / 1e-131 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 381 / 2e-131 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10031254 [exp] 226 / 2e-73 AT3G20820 269 / 2e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10021028 [exp] 154 / 9e-44 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10023824 [exp] 152 / 4e-43 AT5G06860 366 / 1e-126 polygalacturonase inhibiting protein 1 (.1) Lus10002753 [exp] 151 / 3e-40 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G064300 [exp] 483 / 6e-172 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 479 / 3e-170 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.001G017500 [exp] 411 / 1e-143 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 410 / 3e-143 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 154 / 6e-42 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.012G124200 [exp] 152 / 2e-40 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.010G040200 [exp] 151 / 2e-40 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098850 [exp] 146 / 1e-39 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.016G049600 [exp] 141 / 6e-39 AT5G06860 354 / 3e-122 polygalacturonase inhibiting protein 1 (.1) Potri.019G021700 [exp] 147 / 8e-39 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031377 pacid=23156029 polypeptide=Lus10031377 locus=Lus10031377.g ID=Lus10031377.BGIv1.0 annot-version=v1.0 ATGGCAATCCTCCTACTTCTTCTGCTAGCCACGTCACTCACCGCCGCCGCATCCGCCTGCACACCGTCTGACGTGGCGGCACTACAAACAGTCAAATCCT CCCTCACCGACCCTTACCTGGGCATATTCAACACCTGGACAGGCACCGACTGCTCCTCCTACTTCGGAGTCAGCTCCGATCCTTCCACCGGCCACATAAT CGAAATCAACCTCCGAGGCGAATCGGAGGACCCCATCTTCACCAAATCCGGCCGGACATCCGGTTACATGACTGGCACTATCTCCCCAGCCATCTGCCAG CTCGACCAGCTCACAACCGTCGTAATCGCAGACTGGAACGGCCTCTTCGGAGAGATACCCGATTGCATCACCTCCCTTTCCAACCTACGAATCCTGGATC TCGTCGGGAACAACCTAACCGGAAACATCCCTCCCCAAATCGGAAACCTGAAGCAGCTCGCGGTGCTCAATCTCGCTGATAACAGCCTCGTCGGCGAGAT TCCTGCTTCGATTACGGATCTGGAGAGCTTGAAGCATCTGGATCTCAGAAACAATCAGCTCTCCGGGAAGATCCCTTTTAATTTCGGGGATTTGAAGATG CTGAGCCGAGCTCTGCTGAGTAGGAACCAGCTGGAGGGATCGATTCCTGAGTCGGTTTCGAAAATGTACAGGCTGGCGGACTTGGATCTATCCACGAACC GGATTTCTGGTTCAGTGCCGGAGTCAATCGGGGATATGAACGTGCTGTCGACGCTTAATCTGGACGGAAACATGATCGGCGGGGAGATTCCGGGGAAGCT GCTGGGGAGCAAAGGTTTGGGGATTTTGAATTTGAGCAGGAAGGCTTTGGAGGGGAATATACCGGATACGTTTGGGCCCAACGGGTATTTTATGGTGTTG GACCTGTCGTACAATAACTTGAAAGGCCCAATTCCGAAGTCTCTGTCGTCGGCCTCGTTCGTGGGCCATTTGGACTTGAGCCACAACCGTCTCTGTGGAG CGATTCCCGCCGGGGAGCCGTTTGATCGGCTGGGTGCGACGTCGTTTGGTTTCAATGATTGCTTGTGCGGGAACCCGCTTATGACTTGTTAA
AA sequence Show only first row Show all	>Lus10031377 pacid=23156029 polypeptide=Lus10031377 locus=Lus10031377.g ID=Lus10031377.BGIv1.0 annot-version=v1.0 MAILLLLLLATSLTAAASACTPSDVAALQTVKSSLTDPYLGIFNTWTGTDCSSYFGVSSDPSTGHIIEINLRGESEDPIFTKSGRTSGYMTGTISPAICQ LDQLTTVVIADWNGLFGEIPDCITSLSNLRILDLVGNNLTGNIPPQIGNLKQLAVLNLADNSLVGEIPASITDLESLKHLDLRNNQLSGKIPFNFGDLKM LSRALLSRNQLEGSIPESVSKMYRLADLDLSTNRISGSVPESIGDMNVLSTLNLDGNMIGGEIPGKLLGSKGLGILNLSRKALEGNIPDTFGPNGYFMVL DLSYNNLKGPIPKSLSSASFVGHLDLSHNRLCGAIPAGEPFDRLGATSFGFNDCLCGNPLMTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	0	1
AT3G19990			unknown protein		Lus10028680 [exp]	1.4	0.9909
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001752 [exp]	2.4	0.9893
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	3.9	0.9879
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	4.0	0.9878
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10037572 [exp]	4.2	0.9842
AT5G54370			Late embryogenesis abundant (L...		Lus10033540 [exp]	4.9	0.9857
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	5.5	0.9870
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10011430 [exp]	5.7	0.9842
AT5G13910	AP2_ERF	LEAFY PETIOLE ...	LEAFY PETIOLE, Integrase-type ...		Lus10035129 [exp]	5.8	0.9557
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10002551 [exp]	6.5	0.9844

Compare expression of checked genes

Lus10031377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.