Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63910 570 / 0 FCLY farnesylcysteine lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010948 [exp] 892 / 0 AT5G63910 616 / 0.0 farnesylcysteine lyase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G101600 [exp] 590 / 0 AT5G63910 568 / 0.0 farnesylcysteine lyase (.1) Potri.007G101700 [exp] 589 / 0 AT5G63910 521 / 0.0 farnesylcysteine lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07156 [flax] [poplar] Prenylcys_lyase Prenylcysteine lyase
Representative CDS sequence Show only first row Show all	>Lus10031378 pacid=23155793 polypeptide=Lus10031378 locus=Lus10031378.g ID=Lus10031378.BGIv1.0 annot-version=v1.0 ATGGAGTCTCAGCTCTCTGTTCAACATCCTTCTCTGGTCATCATCATCCTCGGCCTCCTCCCGTTCCTCGCTTCTCCTTCCCCGTCACAACTAGATGTCT GCATCGTCGGGAGCGGAATCGCCGGCTCCTCCCTCTCTCATTTCCTCCGCCTCTACTCCAAAGATGCTGCTGATCACCGCGAGTCAACTCTCCGTATCCG GATGTTCGAGCGTCACCCGATCGTCGGCGGACGAATGGCCACCGTCTCCATAGGAGGAAACACCTTCGAGGCCGGAGCGTCGATTCTCCATCCCAAGAAC CTCCACGCCTCCAATTTCACCGACCTGCTCAACTTGAAGCGGAAGCTGCCTTCCAGCTCCGACGACGACTCCATGTCGCTAGGGATTTGGGACGGCGGGG AGTTCGTCTTCAAAACTATGACCATTGATTCCGATATTCCGATTGTTCAAAGGATCGTCTCATGGGCTAATTCCCTTCGCATCTTCCTCCGATACGGATT CTCTCTTCTGAAAATGGAGAGTTTCGTTGAGACTACTGTTGATAAGTTTTTGAAGTATTACCAGAGTACTGAAGAGAGGCCGATCTTCCAAAGTGTGGAC GAGATGCTAAAGTGGGCTGAACTATATGATCTCACCACTAAAACTTTGGAGGATCAATTGATTCATGTAGGATTATCCTCTTTGCTCATCCATGAATTGG TCACTGTTATTACAAGAATTAACTACGGTCAAAGCTGCCAGATCAGTGGCCTGGCCGGAGCAGTTTCCTTGGCCGGATCAGGTGGAGGATTATGGGCAGT TGAAGGAGGGAACTGGCAGATGGCAGCTGGCCTGATCAACATCTCAAAAGTGGAGCTGCACCTCAGTGAGAGAATATCTTCCGTTTCTAAATTTGCTGAT TATTACGAACTCAACTCGACGAAGGGGGATAGTTATGCATGTAATGTCACGGTGATAGCTTCCCCCTTAGATGAATTGGAGATTCAGTTTAAGCCTCCAG TTTCGATCCCTGAAAGGAAATTACAGCACACTTATACTACTTTCGTCAGGGGATTGCTGAACCCCGTATATTTCGGGTTGAAATCTGTTTCAGATATACC GGAACTAGTGGGAACGATTGAAGATCCTACGATTCCATTTTCAAGCATTTCGGTGCTCAAGCAACACAACGAGACAGACATGACTTACAAAGTTTTCTCT CGTAAAGAAATGCCAGATGCATTACTAAATGAGATATTTAGCACAATAGTGGATACTATCCGGCTCGATTGGGGCGCGTACCCTCATTACAAGGCTCCTG AAGTATTCGCACCGTTCATCTTGGACGATCATCACTTGTACTACATTAATGCGTTCGAAAACGCAGCAAGCACCATGGAAACAAGTGCAGTTGCAGCGGA GAATATGGCGCGTCTCATCTTGTCGAGGACTGTTGTTGGGGAAGTCTCGTCGACTTCATCGGATTTGAAGCTCGCTTTCCCTGATGAAGGGGAGATACTG CATTCTGATTTGTAA
AA sequence Show only first row Show all	>Lus10031378 pacid=23155793 polypeptide=Lus10031378 locus=Lus10031378.g ID=Lus10031378.BGIv1.0 annot-version=v1.0 MESQLSVQHPSLVIIILGLLPFLASPSPSQLDVCIVGSGIAGSSLSHFLRLYSKDAADHRESTLRIRMFERHPIVGGRMATVSIGGNTFEAGASILHPKN LHASNFTDLLNLKRKLPSSSDDDSMSLGIWDGGEFVFKTMTIDSDIPIVQRIVSWANSLRIFLRYGFSLLKMESFVETTVDKFLKYYQSTEERPIFQSVD EMLKWAELYDLTTKTLEDQLIHVGLSSLLIHELVTVITRINYGQSCQISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINISKVELHLSERISSVSKFAD YYELNSTKGDSYACNVTVIASPLDELEIQFKPPVSIPERKLQHTYTTFVRGLLNPVYFGLKSVSDIPELVGTIEDPTIPFSSISVLKQHNETDMTYKVFS RKEMPDALLNEIFSTIVDTIRLDWGAYPHYKAPEVFAPFILDDHHLYYINAFENAASTMETSAVAAENMARLILSRTVVGEVSSTSSDLKLAFPDEGEIL HSDL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Lus10031378 [exp]	0	1
AT3G60540			Preprotein translocase Sec, Se...		Lus10037570 [exp]	1.0	0.9347
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10012999 [exp]	2.2	0.9074
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10006574 [exp]	2.4	0.9043
AT2G21190			ER lumen protein retaining rec...		Lus10012176 [exp]	3.2	0.9180
AT5G53800			unknown protein		Lus10003591 [exp]	5.3	0.9083
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10019261 [exp]	8.5	0.9106
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10043112 [exp]	8.8	0.9028
AT1G07710			Ankyrin repeat family protein ...		Lus10003748 [exp]	9.8	0.8706
AT2G46860		ATPPA3	pyrophosphorylase 3 (.1)		Lus10041767 [exp]	10.7	0.8853
AT5G25265			unknown protein		Lus10005347 [exp]	11.4	0.8945

Compare expression of checked genes

Lus10031378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.