Plant FIBer expression Database

Lus10031380 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42780 177 / 2e-55 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010947
[exp]
344 / 2e-121 AT2G42780 204 / 3e-65 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G059000
[exp]
239 / 3e-80 AT2G42780 209 / 3e-67 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF06881 Elongin_A RNA polymerase II transcription factor SIII (Elongin) subunit A
Representative CDS sequence
>Lus10031380 pacid=23155999 polypeptide=Lus10031380 locus=Lus10031380.g ID=Lus10031380.BGIv1.0 annot-version=v1.0
ATGGCCTCTGGTTTCCTCAGCATTGTTGGGAGAGCAAGCAGATTAGGAGTAGCGTTGGAGATGACGACGAGGCGAGAAGCTCCTTCTTTGGTGGATCTTT
GTATCGATGTAGCAATAGAGAATGTGAAGTACCTTGGAGATGTTGGAGAGACCGATTCGGACCTTCTCCGCCGGATTTTATGCCATTGTACGCATGAGCA
GTTGACTCATATCGAGAAGAGCACTGTTGATCGTGATCTTAGCCCGGTGACTGATTCGTTGTGGAGGAAATACTACGAGATCAAGTTCGGTGAGCGAAGT
ACGAATCTTGTGCTTGAAAGAATGAAGATGAAGAAAGTTTCGTTTCAATGGAAGCAATTATTCGAGGCAAAGTTGAAGGATGCTGCCGACGCAGAAAATA
AAGCAGCGGCTCGTCTTCGGGAACGATACAAAAATGAAGATGCAAGGAAACAAAGTCGGCAAATCCAGGTCTGTTCAAAGGTTCCTCCTTCAAGCAATAA
AAGAAGCTGGGGAGGAAGTGGTTATGATACTGGAAACTCGAAGAGCAACATCATGAAGAAAGCGAAAATCGAGTTCCTGAAGAGTCGGGAACTGAAGAAC
ATTGCAGCCATGAACAAGAACAAAAGTGCCGCACTAAGAAGAAGCAGGTAA
AA sequence
>Lus10031380 pacid=23155999 polypeptide=Lus10031380 locus=Lus10031380.g ID=Lus10031380.BGIv1.0 annot-version=v1.0
MASGFLSIVGRASRLGVALEMTTRREAPSLVDLCIDVAIENVKYLGDVGETDSDLLRRILCHCTHEQLTHIEKSTVDRDLSPVTDSLWRKYYEIKFGERS
TNLVLERMKMKKVSFQWKQLFEAKLKDAADAENKAAARLRERYKNEDARKQSRQIQVCSKVPPSSNKRSWGGSGYDTGNSKSNIMKKAKIEFLKSRELKN
IAAMNKNKSAALRRSR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G42780 unknown protein Lus10031380
[exp]
0 1
AT3G08710 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredo... Lus10014186
[exp]
1.4 0.8954
AT3G48860 unknown protein Lus10032546
[exp]
5.7 0.8731
AT2G45170 ATATG8E AUTOPHAGY 8E (.1.2) Lus10004352
[exp]
6.0 0.8910
AT1G04555 unknown protein Lus10023715
[exp]
8.1 0.8947
AT2G45690 PEX16, SSE1, AT... SHRUNKEN SEED 1, ARABIDOPSIS P... Lus10041379
[exp]
8.7 0.8582
AT2G40110 Yippee family putative zinc-bi... Lus10040190
[exp]
11.3 0.8950
AT3G54170 ATFIP37 FKBP12 interacting protein 37 ... Lus10042086
[exp]
11.6 0.8731
AT5G06830 unknown protein Lus10012023
[exp]
12.0 0.8809
AT3G49870 ATARLA1C ADP-ribosylation factor-like A... Lus10025201
[exp]
12.8 0.8569
AT1G13990 unknown protein Lus10036787
[exp]
14.4 0.8675

Lus10031380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.