Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42810 684 / 0 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT5G27840 221 / 6e-69 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT2G29400 218 / 4e-68 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT3G46820 218 / 9e-68 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT5G59160 217 / 2e-67 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT3G05580 216 / 5e-67 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G39840 214 / 3e-66 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT5G43380 214 / 3e-66 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT4G11240 214 / 3e-66 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT1G64040 208 / 5e-64 TOPP3 type one serine/threonine protein phosphatase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020659 [exp] 229 / 6e-70 AT3G05580 562 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10029882 [exp] 223 / 9e-70 AT3G05580 555 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10016489 [exp] 220 / 1e-68 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10031489 [exp] 221 / 2e-68 AT3G05580 565 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10011827 [exp] 219 / 8e-68 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004692 [exp] 217 / 1e-67 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 216 / 3e-67 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004989 [exp] 216 / 3e-67 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10042559 [exp] 216 / 9e-67 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141800 [exp] 627 / 0 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.016G142700 [exp] 219 / 3e-68 AT2G39840 493 / 1e-177 type one serine/threonine protein phosphatase 4 (.1) Potri.006G113100 [exp] 216 / 3e-67 AT2G39840 488 / 4e-175 type one serine/threonine protein phosphatase 4 (.1) Potri.008G060800 [exp] 216 / 3e-67 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.009G037700 [exp] 215 / 8e-67 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.001G245700 [exp] 215 / 1e-66 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.010G197600 [exp] 213 / 7e-66 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G166300 [exp] 213 / 8e-66 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.013G014700 [exp] 213 / 8e-66 AT3G05580 563 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.001G098600 [exp] 212 / 2e-65 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08321 [flax] [poplar] PPP5 PPP5 TPR repeat region CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10031381 pacid=23155959 polypeptide=Lus10031381 locus=Lus10031381.g ID=Lus10031381.BGIv1.0 annot-version=v1.0 ATGGAGATTCCTAGCGCCGGCGAGAAGAAGAGAAGAAAGATCCTCCGTCGTGTTTTTTGCTTCACCCTCCTCCTCCGTCTCCGACCGACCGGCAAATTGG TCAAGAAACTATGTCCAAAGGATCCTGATGCTGCCAAGAAACTGAAGGAATGTGAGAAGGCTGTCCAGAAGCTCAAGTTTGAAGAAGCTATTGCCGCACC TGAGGCTGAAAGGCGTTCGGTTGCTGAATCTATTGACTTCCGTTCCATTGAAGTGGAGCCTAGCTACTCCGGTGCACGGATAGAGGGTGACACCATTACA TTGGATTTTGTGAAGAAAATGATGGATGAGTTCAAGAATGAAAAGCGTCTGCATCGAAGATATGCATTCCAGATTGTGCTGCAAATCCGAGAAATGTTAC AAGCTCTTCCGTCTCTGGTTGATATTGATGTTCCTCGTGGCAAGCATTTCACTGTTTGTGGTGATGTACATGGGCAGTTCTATGATCTCTTGAACATTTT TGAGCTAAATGGGCTTCCTTCAGAAGATAACCCGTATCTATTCAACGGTGACTTTGTTGATAGAGGATCATTTTCTGTGGAAGTCATCCTCACATTATTT GCATTTAAGTGCATGTGTCCATCAGCTATGCATCTTGCGAGAGGAAATCATGAAAGCAAGAGTATGAACAAGATATATGGCTTTGAAGGCGAGGTCCGGT CCAAGTTGAATGATAAGTTTGTGGAGCTCTTTGCAGAGGTCTTCTGTTGTTTACCCTTGGCTCATGTAATAAATGGGAAGGTATTTGTGGTGCATGGAGG TCTTTTTAGTGTTGACGGAGTGAAGCTATCTGACATTAGGGCAATTGATCGATTCTGCGAACCTCCAGAGGAAGGGCTAATGTGTGAATTGCTGTGGAGT GATCCGCAACCTCTTCCTGGAAGAGGTCCGAGCAAGCGAGGTGTAGGTCTTTCATTCGGCGGAGATGTGACCAAACGATTTCTGGACGAAAACAATCTAG AATTGGTTGTGAGATCTCACGAAGTAAAAGATGAAGGGTACGAGATCGATCATGACGGCAAACTTATTACAGTATTCTCTGCCCCTAACTACTGCGATCA GATGGGTAACAAGGGCGCTTTCATCCGATTCGAGGCCCCCGATATGAAGCCTAATCTCGTCACATTCTCAGCAGTTCCTCACCCTCAAGTGAGACCCATG GCGTATGCCAACAACTTCATGGGGCTCTTCTCATAA
AA sequence Show only first row Show all	>Lus10031381 pacid=23155959 polypeptide=Lus10031381 locus=Lus10031381.g ID=Lus10031381.BGIv1.0 annot-version=v1.0 MEIPSAGEKKRRKILRRVFCFTLLLRLRPTGKLVKKLCPKDPDAAKKLKECEKAVQKLKFEEAIAAPEAERRSVAESIDFRSIEVEPSYSGARIEGDTIT LDFVKKMMDEFKNEKRLHRRYAFQIVLQIREMLQALPSLVDIDVPRGKHFTVCGDVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSVEVILTLF AFKCMCPSAMHLARGNHESKSMNKIYGFEGEVRSKLNDKFVELFAEVFCCLPLAHVINGKVFVVHGGLFSVDGVKLSDIRAIDRFCEPPEEGLMCELLWS DPQPLPGRGPSKRGVGLSFGGDVTKRFLDENNLELVVRSHEVKDEGYEIDHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDMKPNLVTFSAVPHPQVRPM AYANNFMGLFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Lus10031381 [exp]	0	1
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	1.7	0.8757
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10030951 [exp]	2.0	0.8159
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	6.7	0.8366
AT4G24790			AAA-type ATPase family protein...		Lus10013665 [exp]	6.8	0.8429
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Lus10031772 [exp]	8.4	0.8073
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10030076 [exp]	10.5	0.7826
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	11.2	0.8107
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	20.5	0.7974
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	23.4	0.7926
AT3G63240			DNAse I-like superfamily prote...		Lus10006904 [exp]	27.5	0.8129

Compare expression of checked genes

Lus10031381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.