Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66340 1157 / 0 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 785 / 0 ERS1 ethylene response sensor 1 (.1) AT3G04580 415 / 2e-134 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G23150 406 / 6e-131 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT1G04310 294 / 1e-89 ERS2 ethylene response sensor 2 (.1) AT1G27320 122 / 2e-28 AHK3 histidine kinase 3 (.1) AT5G10720 120 / 8e-28 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT5G35750 113 / 1e-25 AHK2 histidine kinase 2 (.1) AT2G17820 109 / 3e-24 AHK1, ATHK1 histidine kinase 1 (.1) AT2G01830 106 / 2e-23 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020778 [exp] 1286 / 0 AT1G66340 1220 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10007357 [exp] 1283 / 0 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10010310 [exp] 841 / 0 AT2G40940 904 / 0.0 ethylene response sensor 1 (.1) Lus10013415 [exp] 840 / 0 AT2G40940 907 / 0.0 ethylene response sensor 1 (.1) Lus10022203 [exp] 440 / 1e-143 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10022009 [exp] 439 / 2e-143 AT3G04580 937 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10021212 [exp] 435 / 5e-142 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10042549 [exp] 435 / 6e-142 AT3G04580 944 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10006574 [exp] 437 / 9e-142 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032300 [exp] 1218 / 0 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.001G204200 [exp] 1216 / 0 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 869 / 0 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.008G164400 [exp] 477 / 3e-158 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.010G074300 [exp] 470 / 2e-155 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.013G044100 [exp] 452 / 2e-148 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.019G014300 [exp] 450 / 8e-148 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.003G171000 [exp] 121 / 5e-28 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 117 / 7e-27 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.014G164700 [exp] 107 / 2e-23 AT5G35750 1359 / 0.0 histidine kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Lus10031382 pacid=23155866 polypeptide=Lus10031382 locus=Lus10031382.g ID=Lus10031382.BGIv1.0 annot-version=v1.0 ATGGATTCTTGCAATTGTATTGAACCGCTGTTGCCGACTGATGGATTGCTGTCCAAGTATCAGTACATTTCAGATTTTTTCATTGCTCTGGCTTATTTCT CGATTCCATTGGAGCTCATCTACTTCGTGAAGAAATCAGCCGTATTCCCTTATAGATGGGTCTTTGTGCAGTTTGGGGCTTTCATAGTCCTATGTGGAGC TACCCATCTTATTAACTTATGGACCTTCACCATTCATTCGAGAACTGTTGCCATCGTGATGACCACTGCGAAAATTTTGACTGCAGTAGTTTCATGTGCG ACTGCTCTTATGCTTGTCCATATTATTCCTGATCTTTTGAGTGTAAAGACTAGGGAACTGTTTCTGAAAAACAAGGCTGCACAGTTGGATCGTGAAATGG GTCTAATTCGCACTCAGGAAGAAACGGGGAGGCATGTCCGGATGTTGACTCATGAGATCAGAAGCACTCTTGACAGACACACCATTCTGAAGACTACGCT TGTTGAACTTGGTAGGACTTTGTCGCTGGAAGAGTGCGCCTTATGGATGCCGACACGTACCGGGTTGGAGCTCCAGCTTGCGTACACTCTTTGCCAGCAG AGCCCTGTTGGACATACGGTGCCCATTCATGTACCTGTAATTAATCAAGTATTCAGTACTAACCGCGCAGTGAAAATATCTCCTAATTCAACGGTGGCTA GATTAAGGCCTGTTGCTGGAAAGTACCCTGGAGAGGTGGTTGCTGTTCGGGTGCCACTCCTCCATCTATCTAATTTCCAGATCAACGACTGGCCTGAGCT TTCAACCAAACGGTATGCGTTGATGGTTTTGATGCTTCCCTCGGATAGTGCAAGGCAGTGGCATGAATATGAGTTGGAGCTTGTTGAAGTAGTCGCCGAT CAGGTTGCTGTTGCTCTATCACATGCTGCAATCCTCGAGGAATCCATGAGGGCAAGGGATCTACTCATGGAGCAGAATGTTGCCCTTGATCTTGCTAGAA GAGAAGCAGAAACAGCGATTCGTGCTCGCAATGATTTCTTGGCTGTGATGAACCATGAGATGAGAACTCCTATGCATGCGATTATAGCACTTTCCTCCTT GTTACAGGAAACTGAACTGACACCAGAGCAACGACTGATGATTGAGACGATTTTGAAGAGTAGTAATCTCCTCGCTACTCTAATAAACGATGTCTTAGAT TTATCAAGGCTTGAAGATGGAAGCCTTCAGCTCGACATTGGAAATTTCGATCTGCATGCTGTTTTCAAAGAGGTTATCAACTTAATAAGGCCTATTGCTT CTGTTAAGAAATTGCTGGTTACCTTGCATTTGGGTCCAGATTTACCCGAATGTGCGGTTGGTGACGAAAAACGCCTTATGCAAACCCTCCTTAATGTTGT TGGTAATGCTGTGAAGTTCTCAAAAGAAGGGAGCATCTCAGTGACTGCTTTTGTTGCAAAGGGAGAATCTCTAAGGGATCCCAGAGCTCCTGATTTCCTT CCAGTACCAAGTGATAACCACTTTTATTTGCGTGTACAGGTGAAAGATACAGGTTCAGGAATAAATCCTCAAGATATTCCTAAGTTGTTTACCAAATTTG CACAAGCTCAGTCTTCGACATCAAGAAATTCTAGTGGCAGCGGACTTGGTCTTGCGATTTGTAAGAGGTTTGTAAATCTCATGGAAGGGCATATTTGGCT TGAAAGTGACGGTATGGGCAAGGGTTGCACTGCAATCTTTATGGTTAAAGTTGGGATTGCAGAGCGCTCTAATGAGTCTAAGCTTTCTGCTGCAACTAAA TCATCAATAAGCCATACACATACCAACTTTCCTGGAGTCCGAGTTATAGTGATGGATGATAACAAGTGTAGTGTCAGCAGGGATACGACCAAAGGACTTC TAGTGCACTTAGGATGCGATGTCAAAACCGCAAGCTCAGGCGACGAGTGCTTGCGCTTGATCTCCCAAGACCACCACGTGGTATTCATCGATGTAAGTAT ACACGATGGCTACGAAGTTGCTCTTCGTATCCACGAGAAGTTCGCCAAGCGTCAGGAGAGACCATTGACGGTGGCCCTGACTGCCAACACCGACAAAGTC ACTAAGGAAAATTGCCGAAGGGTTGGGATGGACGGCATTGTACTGAAACCCGTCTCGGTTGATCGAATGAGAAGTATCTTGTCCGACCTTCTCGGCCATC GGATTCTACTATAG
AA sequence Show only first row Show all	>Lus10031382 pacid=23155866 polypeptide=Lus10031382 locus=Lus10031382.g ID=Lus10031382.BGIv1.0 annot-version=v1.0 MDSCNCIEPLLPTDGLLSKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVFVQFGAFIVLCGATHLINLWTFTIHSRTVAIVMTTAKILTAVVSCA TALMLVHIIPDLLSVKTRELFLKNKAAQLDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLSLEECALWMPTRTGLELQLAYTLCQQ SPVGHTVPIHVPVINQVFSTNRAVKISPNSTVARLRPVAGKYPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHEYELELVEVVAD QVAVALSHAAILEESMRARDLLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMIETILKSSNLLATLINDVLD LSRLEDGSLQLDIGNFDLHAVFKEVINLIRPIASVKKLLVTLHLGPDLPECAVGDEKRLMQTLLNVVGNAVKFSKEGSISVTAFVAKGESLRDPRAPDFL PVPSDNHFYLRVQVKDTGSGINPQDIPKLFTKFAQAQSSTSRNSSGSGLGLAICKRFVNLMEGHIWLESDGMGKGCTAIFMVKVGIAERSNESKLSAATK SSISHTHTNFPGVRVIVMDDNKCSVSRDTTKGLLVHLGCDVKTASSGDECLRLISQDHHVVFIDVSIHDGYEVALRIHEKFAKRQERPLTVALTANTDKV TKENCRRVGMDGIVLKPVSVDRMRSILSDLLGHRILL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10031382 [exp]	0	1
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10037621 [exp]	3.0	0.9266
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	6.7	0.8941
AT4G08480		MEKK2, MAPKKK9	MAPK/ERK KINASE KINASE 2, mito...		Lus10029657 [exp]	8.1	0.9122
AT1G54610			Protein kinase superfamily pro...		Lus10004144 [exp]	9.2	0.8961
AT5G55060			unknown protein		Lus10021546 [exp]	10.4	0.8988
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10036563 [exp]	11.2	0.8909
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Lus10040107 [exp]	11.8	0.8910
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10033243 [exp]	14.0	0.8825
AT1G27170			transmembrane receptors;ATP bi...		Lus10026011 [exp]	15.0	0.9011
AT4G31450			RING/U-box superfamily protein...		Lus10020145 [exp]	15.4	0.9101

Compare expression of checked genes

Lus10031382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.