Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42800 399 / 2e-134 AtRLP29 receptor like protein 29 (.1) AT1G80080 189 / 2e-53 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT4G28560 180 / 2e-50 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT1G13230 175 / 7e-49 Leucine-rich repeat (LRR) family protein (.1) AT3G25670 166 / 5e-45 Leucine-rich repeat (LRR) family protein (.1) AT1G68780 147 / 9e-39 RNI-like superfamily protein (.1) AT4G20140 146 / 1e-36 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G35710 144 / 5e-36 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G48940 144 / 5e-36 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G36180 142 / 2e-35 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010946 [exp] 649 / 0 AT2G42800 459 / 2e-159 receptor like protein 29 (.1) Lus10042458 [exp] 197 / 2e-57 AT1G80080 467 / 3e-163 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10026208 [exp] 196 / 4e-56 AT1G80080 500 / 2e-175 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10034261 [exp] 178 / 7e-50 AT1G13230 460 / 6e-161 Leucine-rich repeat (LRR) family protein (.1) Lus10003624 [exp] 173 / 1e-47 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10034384 [exp] 164 / 7e-45 AT1G13230 455 / 5e-159 Leucine-rich repeat (LRR) family protein (.1) Lus10038948 [exp] 159 / 1e-42 AT1G68780 404 / 2e-138 RNI-like superfamily protein (.1) Lus10008242 [exp] 146 / 3e-38 AT4G28560 395 / 8e-135 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10027239 [exp] 141 / 2e-36 AT3G25670 402 / 6e-138 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G211800 [exp] 392 / 8e-132 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.001G202100 [exp] 185 / 6e-52 AT1G80080 597 / 0.0 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Potri.005G227600 [exp] 174 / 5e-48 AT4G28560 444 / 2e-153 ROP-interactive CRIB motif-containing protein 7 (.1) Potri.008G114700 [exp] 166 / 4e-45 AT1G68780 387 / 2e-131 RNI-like superfamily protein (.1) Potri.019G120733 [exp] 154 / 3e-39 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 154 / 3e-39 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.012G130400 [exp] 148 / 2e-37 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.002G008450 [exp] 147 / 2e-37 AT4G08850 462 / 9e-150 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.010G040200 [exp] 147 / 2e-37 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.001G042500 [exp] 148 / 3e-37 AT2G24130 703 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10031383 pacid=23156069 polypeptide=Lus10031383 locus=Lus10031383.g ID=Lus10031383.BGIv1.0 annot-version=v1.0 ATGTTCTTCTTCTCTCCTAATCATCTCCTCTTCCTCTTCTTCTTCCTTCACCTCCTCCCATTATTGGTCGACGCAACCAACCACAACAACAAAAACCTTC TCCTTCCCAAGGCCGAATCCGACACTCTTTTCGACATCATCGACTCCCTTTCCGGCCAATCCTGGCGCGCCACGCACCCCAACCCCTGTCAGCATCCCTC CTCCTCCGTCTGGCCGGGAATCCACTGCATTCCCGGCTCAGACGGACGCCTCCACATCTCCCATCTCGAATTCGGAACCCCACCCAACCCAACCTGCAAA CCGAATTCCACATTCCCTTCCTTAATCTTCTCCCTCCCTTACCTCAACTCCTTAATGTTCTTCAAATGTTTCACTTCCACCAAGACTATCCTCCTCTTCC CCAAATCTTCATCTTCTTCTTCACAACTTCAACAGCTTAGCCTCCGATCGAACCCGGCCCTAATTGGCCCCATCCCACCCGAAATCTCCTCTTTAAAATC ACTCAAAATCCTCACACTTTCCCAAAACCGCCTCGCCGGCTCAATCCCCCCGGAGATCGCCATGCTAACCTCTCTCGTACATCTCGATTTGAGCTACAAT ATGTTAACCGGTTCGATACCGGTTCAACTCGGCAGTCTCAAAACACTAGCCGGTCTCGATTTGAGCTACAATTCCCTCGCTGGAGCCATCCCGCCTCCGA TCGGCGACATGATTTTCCTCCAGAAGCTCGATCTGAGCTCGAATCTGCTCACGGGCGCCATCCCCAGCACAATTGGAAAGCTCGTCAGTCTAGATTTCCT CGATCTAAGCCACAACCACTTCACCGGAAAATTCCCGTCGCAGATATCCAAGCTGCAGAGTCTACAGTACCTAATCATGGACGATAATCCGATGAACATT CCTCTCCCCGTTGAGATCGGGGAGCTCTTAAAGCTGCAAGAGCTCCGGCTAGCGAACTCCGGATACTGGGGTGGAATTCCGGCGAGCATTTCAAACCTGC AGAACTTGACAACTCTATCGCTCGAGAACAACAAATTGACAGGGGAGATCCCGGAAAAGATCGGGGATCTTCCCAGGATTTATCATCTGAACTTGAGCAG GAACTCGCTCGCCGGGATCGTGCCGTTTGGGGAAGTGTTTGTGAAAAGATTGGGGAAGAACTTGGATTTGAGTGGGAATCCGGGACTGTGTTTGAGGGCC GGTGAAACAGCGGCGTTTGGCGGGGGAGGAGGAATTGGGGTTTGTGGTGAAGGGATGATGAAGAAGAAGAAGAGTGGTGATTTGATGAGGAGATCTGAAG CGTCGACGATCGGAGTTTCGCCGGCGACTGAAGATGCTATAGCCAAACAGCCAATCACTCCAGCGGCGACGCTTGATTACACGGGGATCAAGACTCGGCT GCGTGCTGTCGGAGAATCTTTGGTGATGAATTGGAAGATGAGATCGGAAGTCGGCGCCGGAGGGAGTATGTTCCGATTGGAGAGTGTGAAGGAGACAACA CCGGAGACTGACGGCGGCGTTAAATTGGAGGAAGGGCGCGGAGGAGGAACCGGAACCATCGTGTATTTCATCAGAGAGGATGCAGAGGTTAAGATCGAGA AGGAGATCATTACCAGGTCAAATAAGAAAAGTAAAGGGAGTGTTTGTATACCATTATCGACGGCGATCGTCATATTGGGTCTGATCTGTGCATTGATCGA GTATACATCGAAATGA
AA sequence Show only first row Show all	>Lus10031383 pacid=23156069 polypeptide=Lus10031383 locus=Lus10031383.g ID=Lus10031383.BGIv1.0 annot-version=v1.0 MFFFSPNHLLFLFFFLHLLPLLVDATNHNNKNLLLPKAESDTLFDIIDSLSGQSWRATHPNPCQHPSSSVWPGIHCIPGSDGRLHISHLEFGTPPNPTCK PNSTFPSLIFSLPYLNSLMFFKCFTSTKTILLFPKSSSSSSQLQQLSLRSNPALIGPIPPEISSLKSLKILTLSQNRLAGSIPPEIAMLTSLVHLDLSYN MLTGSIPVQLGSLKTLAGLDLSYNSLAGAIPPPIGDMIFLQKLDLSSNLLTGAIPSTIGKLVSLDFLDLSHNHFTGKFPSQISKLQSLQYLIMDDNPMNI PLPVEIGELLKLQELRLANSGYWGGIPASISNLQNLTTLSLENNKLTGEIPEKIGDLPRIYHLNLSRNSLAGIVPFGEVFVKRLGKNLDLSGNPGLCLRA GETAAFGGGGGIGVCGEGMMKKKKSGDLMRRSEASTIGVSPATEDAIAKQPITPAATLDYTGIKTRLRAVGESLVMNWKMRSEVGAGGSMFRLESVKETT PETDGGVKLEEGRGGGTGTIVYFIREDAEVKIEKEIITRSNKKSKGSVCIPLSTAIVILGLICALIEYTSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10031383 [exp]	0	1
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10001534 [exp]	1.4	0.9782
AT2G42800		AtRLP29	receptor like protein 29 (.1)		Lus10010946 [exp]	1.7	0.9691
AT5G60370			unknown protein		Lus10023342 [exp]	3.2	0.9673
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10019106 [exp]	3.2	0.9759
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10004945 [exp]	7.9	0.9587
AT1G01160		GIF2	GRF1-interacting factor 2 (.1....		Lus10008847 [exp]	8.1	0.9356
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10019105 [exp]	8.4	0.9535
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10037371 [exp]	10.8	0.9678
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10011033 [exp]	11.7	0.9233
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10034881 [exp]	12.8	0.9301

Compare expression of checked genes

Lus10031383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.