Plant FIBer expression Database

Lus10031384 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58750 780 / 0 CSY2 citrate synthase 2 (.1)
AT2G42790 779 / 0 CSY3 citrate synthase 3 (.1)
AT3G58740 689 / 0 CSY1 citrate synthase 1 (.1)
AT2G44350 120 / 4e-29 CSY4, ATCS CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2)
AT3G60100 115 / 2e-27 CSY5 citrate synthase 5 (.1)
AT3G06650 45 / 0.0001 ACLB-1 ATP-citrate lyase B-1 (.1)
AT5G49460 45 / 0.0001 ACLB-2 ATP citrate lyase subunit B 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010945
[exp]
905 / 0 AT2G42790 855 / 0.0 citrate synthase 3 (.1)
Lus10019688
[exp]
114 / 3e-27 AT2G44350 784 / 0.0 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2)
Lus10031385
[exp]
97 / 1e-23 AT3G58750 88 / 4e-21 citrate synthase 2 (.1)
Lus10006943
[exp]
53 / 4e-07 AT2G44350 428 / 2e-148 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G089300
[exp]
801 / 0 AT3G58750 855 / 0.0 citrate synthase 2 (.1)
Potri.014G141900
[exp]
796 / 0 AT3G58750 867 / 0.0 citrate synthase 2 (.1)
Potri.001G230500
[exp]
111 / 4e-26 AT2G44350 792 / 0.0 CITRATE SYNTHASE 4, Citrate synthase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00285 Citrate_synt Citrate synthase, C-terminal domain
Representative CDS sequence
>Lus10031384 pacid=23156058 polypeptide=Lus10031384 locus=Lus10031384.g ID=Lus10031384.BGIv1.0 annot-version=v1.0
ATGTCTAGATTCGAAGACTCCTCCCGATCTTCTTCCTCCGCCAACGCCAACGCCCGCCTGGCGGTGCTCGCAGCTCATTTGGCTGCAGCTGCTTCCGTGG
AGTCGCCGTCTCCCTTCACCGGCATCGAGCGGTTGGTCGTCTCGAGTAATGAAAATGATTGCACTCCTAACCTTAAAGGTACGCTCACCGTCGTTAACGA
GAAGACCGGTCAGACTCACAAACTCGCGGTGTCCGAGCATGGCACCGTCAGTGCCTCCGATTTCAAGAAGATACCTGCAGGAAAGAGGGGGCAGGGACTC
AAGCTGTATGATCCAGGCTACCTAAACACGGCTCCTGTTCGGTCTGCTATTTCTTATATTGATGGTGATGAAGGTATCCTTAGATATAGAGGCTACCCAA
TTGAGGAGTTGGCTGAGAAAAGCACGTTTGTGGAAGTGGCTTACCTCATAATGTACGGGAATCTGCCATCTGAAACTCAATTGGCCGACTGGGAATTTGC
CATCTCTCAACATTCAGCTGTGCCACAAGGTGTTTTGAATCTCATCCAGGCAATGCCTCATGATTCTCATCCAATGGGTGTCCTTGTCACTGCTGTCAGC
GCTCTGTCCATTTTCCATCCTGATGCTAACCCAGCTCTTAGGGGGCAAGATCTTTATAAGTCAAAGCAAGTGAGAGACAAGCAAATTGCACGCATTCTTG
GAAAGGTCCCAACTATTGCAGCAGCAGCATATCTGAGGTTGGCAGGCAGGCCTCCTGTTCTACCTTCCAGCAACCTGTCTTATTCAGAGAATTTCCTCTA
CATGCTGGACTCATTGGGCAATAGGGCTTACAAACCCAATCCTCGATTAGCTCGAGTGCTAGATATACTTTTCATTCTGCATGCAGAACATGAAATGAAT
TGCTCCACTTCTGCTGCCCGGCATCTCGCCTCAAGTGGTGTTGATGTATACACTGCACTTGCTGGAGCTGTCGGAGCACTGTATGGGCCTCTCCACGGTG
GTGCAAATGAGGCCGTGCTAAAGATGCTTAGCGAGATTGGATCAGTTGAAAACATTCCAGAATTCATTGAAGGTGTGAAGAATAGGAAACGAAAGATGTC
TGGGTTTGGCCATCGTGTATACAAAAACTATGATCCAAGGGCTAAAGTGATCAAGAAACTGGCAGACGAAGTGTTCTCCATCGTCGGGCGTGATCCTCTC
ATCGAGGTAGCCGTTGCTTTGGAGAAGGCTGCGCTCTCTGACGAATACTTTGTCAAGAGGAAGCTCTACCCTAATGTTGATTTCTACTCAGGGTTGATAT
ACAGGGCAATGGGATTCCCTACAGAGTTCTTCCCTGTTCTATTCGCAATTCCTCGAATGGCCGGTTACTTGGCTCACTGGCGAGAGTCGCTCGATGATCC
GGACACAAAGATCATGAGACCTCAGCAGGCCAGTCTACGTTGGGGAGTGGCTGCGACGCTACGCCCCTGTGCAGGAGCGCGTTCCGTCGCAGGAAACAGA
CAAGCTGGGGCAGATTTCGGTTTCGAATGCGTCAAGGCGACGACTTGCTGGGTCTAG
AA sequence
>Lus10031384 pacid=23156058 polypeptide=Lus10031384 locus=Lus10031384.g ID=Lus10031384.BGIv1.0 annot-version=v1.0
MSRFEDSSRSSSSANANARLAVLAAHLAAAASVESPSPFTGIERLVVSSNENDCTPNLKGTLTVVNEKTGQTHKLAVSEHGTVSASDFKKIPAGKRGQGL
KLYDPGYLNTAPVRSAISYIDGDEGILRYRGYPIEELAEKSTFVEVAYLIMYGNLPSETQLADWEFAISQHSAVPQGVLNLIQAMPHDSHPMGVLVTAVS
ALSIFHPDANPALRGQDLYKSKQVRDKQIARILGKVPTIAAAAYLRLAGRPPVLPSSNLSYSENFLYMLDSLGNRAYKPNPRLARVLDILFILHAEHEMN
CSTSAARHLASSGVDVYTALAGAVGALYGPLHGGANEAVLKMLSEIGSVENIPEFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIKKLADEVFSIVGRDPL
IEVAVALEKAALSDEYFVKRKLYPNVDFYSGLIYRAMGFPTEFFPVLFAIPRMAGYLAHWRESLDDPDTKIMRPQQASLRWGVAATLRPCAGARSVAGNR
QAGADFGFECVKATTCWV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G58750 CSY2 citrate synthase 2 (.1) Lus10031384
[exp]
0 1
AT5G43830 Aluminium induced protein with... Lus10039382
[exp]
1.0 0.9208
AT3G11240 ATATE2, ATE2 arginine-tRNA protein transfer... Lus10040189
[exp]
2.2 0.8451
AT1G76900 TUB AtTLP1 tubby like protein 1 (.1.2) Lus10029780
[exp]
2.4 0.8437
AT3G19990 unknown protein Lus10017359
[exp]
4.0 0.8547
AT3G56460 GroES-like zinc-binding alcoho... Lus10003691
[exp]
4.6 0.8578
AT2G43400 ETFQO electron-transfer flavoprotein... Lus10025584
[exp]
7.3 0.8265
AT1G35470 SPla/RYanodine receptor (SPRY)... Lus10009451
[exp]
7.9 0.8003
AT2G03890 UBDKGAMMA7, ATP... UBIQUITIN-LIKE DOMAIN KINASE G... Lus10036834
[exp]
9.2 0.8100
AT5G42940 RING/U-box superfamily protein... Lus10024810
[exp]
9.5 0.8073
AT5G06560 Protein of unknown function, D... Lus10029342
[exp]
10.9 0.8379

Lus10031384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.