Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58750 87 / 7e-21 CSY2 citrate synthase 2 (.1) AT2G42790 87 / 1e-20 CSY3 citrate synthase 3 (.1) AT3G58740 68 / 3e-14 CSY1 citrate synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031384 [exp] 98 / 1e-24 AT3G58750 796 / 0.0 citrate synthase 2 (.1) Lus10010945 [exp] 95 / 1e-23 AT2G42790 855 / 0.0 citrate synthase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G089300 [exp] 95 / 1e-23 AT3G58750 855 / 0.0 citrate synthase 2 (.1) Potri.014G141900 [exp] 95 / 2e-23 AT3G58750 867 / 0.0 citrate synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00285 [flax] [poplar] Citrate_synt Citrate synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031385 pacid=23155950 polypeptide=Lus10031385 locus=Lus10031385.g ID=Lus10031385.BGIv1.0 annot-version=v1.0 ATGTCCAGATTAGAAGACAGCTCCCGATCTTCCTCCTCCGCCACCGCCCGCCTGGGGGTGCTCGCATCTCATTTGGCTGCAGCTGCTTCCAGGGAGTCGC CCTTCGCCGGCATCGAGCGGTTGGTTGTTTTGAGTAATGACAATGGTCGCACTCCCAACCTTACGGGTACGCTTACCGTTGTCAACGACAAGCCGGCCAG ACTCACAAACTCCTGGTGTCTGAGCATGGCACCGTCAGTGCCTCCGATTTCAAGAAGGAAAGAGCGGGCAATGGGATTCCCTACAGAGTTCTTCCCTGTT CTGCTTGTAATTCCTCGAATGGCCGGTTACTTAGCTCACTGGCGAGAGTCGCTCGATGATCCGGACACAAAGATCATGAGACCTCAGCAGGCCAGTTCTT AA
AA sequence Show only first row Show all	>Lus10031385 pacid=23155950 polypeptide=Lus10031385 locus=Lus10031385.g ID=Lus10031385.BGIv1.0 annot-version=v1.0 MSRLEDSSRSSSSATARLGVLASHLAAAASRESPFAGIERLVVLSNDNGRTPNLTGTLTVVNDKPARLTNSWCLSMAPSVPPISRRKERAMGFPTEFFPV LLVIPRMAGYLAHWRESLDDPDTKIMRPQQASS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031385 [exp]	0	1
					Lus10031026 [exp]	13.3	0.8707
					Lus10014856 [exp]	15.0	0.8108
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10004705 [exp]	24.0	0.8625
AT2G24560			GDSL-like Lipase/Acylhydrolase...		Lus10026405 [exp]	32.2	0.8539
AT4G27300			S-locus lectin protein kinase ...		Lus10038555 [exp]	68.1	0.8161
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025073 [exp]	80.1	0.7958
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10012039 [exp]	115.9	0.7982
					Lus10003493 [exp]	131.6	0.8067
AT2G45410	AS2	LBD19	LOB domain-containing protein ...		Lus10009298 [exp]	142.7	0.7946
					Lus10009436 [exp]	145.6	0.7981

Compare expression of checked genes

Lus10031385 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.