Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25140 145 / 5e-45 OLE1, OLEO1 oleosin 1 (.1) AT2G25890 115 / 1e-33 Oleosin family protein (.1) AT5G51210 112 / 2e-32 OLEO3 oleosin3 (.1) AT3G01570 75 / 2e-17 Oleosin family protein (.1) AT5G40420 75 / 3e-17 OLE2, PA23, OLEO2 oleosin 2 (.1) AT3G27660 70 / 2e-15 OLE3, OLEO4 OLEOSIN 3, oleosin 4 (.1) AT5G07550 67 / 3e-15 ATGRP19, GRP19 glycine-rich protein 19 (.1.2.3) AT3G18570 63 / 4e-13 Oleosin family protein (.1) AT5G61610 62 / 4e-12 Oleosin family protein (.1) AT1G48990 57 / 6e-11 Oleosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010943 [exp] 223 / 2e-70 AT1G22400 535 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10027161 [exp] 184 / 1e-60 AT4G25140 154 / 3e-48 oleosin 1 (.1) Lus10039683 [exp] 175 / 4e-57 AT4G25140 159 / 2e-50 oleosin 1 (.1) Lus10017460 [exp] 157 / 9e-50 AT4G25140 136 / 9e-42 oleosin 1 (.1) Lus10028822 [exp] 152 / 3e-48 AT4G25140 146 / 3e-46 oleosin 1 (.1) Lus10022141 [exp] 90 / 5e-22 AT4G25140 106 / 3e-28 oleosin 1 (.1) Lus10017992 [exp] 79 / 8e-19 AT3G18570 136 / 4e-41 Oleosin family protein (.1) Lus10041987 [exp] 76 / 1e-17 AT3G18570 129 / 2e-38 Oleosin family protein (.1) Lus10042957 [exp] 69 / 3e-15 AT3G18570 139 / 2e-42 Oleosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G080000 [exp] 135 / 7e-42 AT4G25140 108 / 1e-30 oleosin 1 (.1) Potri.003G150600 [exp] 135 / 7e-42 AT4G25140 124 / 3e-37 oleosin 1 (.1) Potri.006G234900 [exp] 106 / 5e-30 AT2G25890 113 / 1e-32 Oleosin family protein (.1) Potri.018G057800 [exp] 93 / 6e-25 AT2G25890 91 / 5e-24 Oleosin family protein (.1) Potri.001G345800 [exp] 78 / 8e-19 AT3G01570 140 / 6e-43 Oleosin family protein (.1) Potri.T125308 [exp] 75 / 1e-17 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.015G081901 [exp] 75 / 1e-17 AT5G40420 108 / 5e-30 oleosin 2 (.1) Potri.017G071800 [exp] 72 / 9e-17 AT3G01570 130 / 4e-39 Oleosin family protein (.1) Potri.012G083400 [exp] 71 / 4e-16 AT5G40420 97 / 2e-25 oleosin 2 (.1) Potri.012G059400 [exp] 68 / 6e-15 AT3G18570 113 / 4e-32 Oleosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01277 [flax] [poplar] Oleosin Oleosin
Representative CDS sequence Show only first row Show all	>Lus10031387 pacid=23156033 polypeptide=Lus10031387 locus=Lus10031387.g ID=Lus10031387.BGIv1.0 annot-version=v1.0 ATGGATCAGTCACATCAGACGCAGTACGGCGGCACCATGCAAAACCAACCGCAGTACCAAACAAAGTCTTACCAGGCAGTGAAGGCCGCCACCGCCGCCA CTGCCGGTGGGTCTCTCCTGGTTCTCTCCGGTCTCATCCTTGTCGCCACTGTCATTGCCTTGACCATGGCGACTCCTCTACTTGTCATCTTCAGCCCGGT TCTCGTCCCGGCTCTGATCACCGTCGGGTTAGTGATCACCGGGTTTTTGGCCTCCGGTGGGTTCGGAGTGGCCGCCATCACCGTCTTGTCATGGATCTAT AGGTATGTGACCGGGAGGCATCCTGTCGGAGCGGATTCGCTGGACCAGGCGAGGATGAGGATTTCCGGGAAGGCAAGGGAGATGAAGGATAGGGCGTCGG ATTTCGGGCAGCAGCATGTTTCCGGTCAACAGACCTCTTAA
AA sequence Show only first row Show all	>Lus10031387 pacid=23156033 polypeptide=Lus10031387 locus=Lus10031387.g ID=Lus10031387.BGIv1.0 annot-version=v1.0 MDQSHQTQYGGTMQNQPQYQTKSYQAVKAATAATAGGSLLVLSGLILVATVIALTMATPLLVIFSPVLVPALITVGLVITGFLASGGFGVAAITVLSWIY RYVTGRHPVGADSLDQARMRISGKAREMKDRASDFGQQHVSGQQTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10031387 [exp]	0	1
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10002496 [exp]	10.7	0.8063
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	10.8	0.8062
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10004215 [exp]	13.3	0.7707
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10033427 [exp]	16.3	0.8051
					Lus10007128 [exp]	18.0	0.7913
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10035525 [exp]	19.1	0.8037
					Lus10003755 [exp]	23.0	0.8010
AT1G33530			F-box family protein (.1)		Lus10014984 [exp]	25.6	0.7925
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027771 [exp]	25.9	0.7962
					Lus10040989 [exp]	26.7	0.6966

Compare expression of checked genes

Lus10031387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.