Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 644 / 0 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 642 / 0 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 634 / 0 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22340 622 / 0 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 593 / 0 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 553 / 0 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT5G59590 275 / 2e-87 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT5G59580 274 / 7e-87 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT3G46670 268 / 1e-84 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT3G46660 261 / 4e-82 UGT76E12 UDP-glucosyl transferase 76E12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010943 [exp] 788 / 0 AT1G22400 535 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024583 [exp] 629 / 0 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 627 / 0 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10041055 [exp] 594 / 0 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10032218 [exp] 590 / 0 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 587 / 0 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10010665 [exp] 549 / 0 AT1G22400 516 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10007421 [exp] 543 / 0 AT1G22400 529 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013924 [exp] 543 / 0 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G098400 [exp] 698 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098300 [exp] 636 / 0 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052166 [exp] 624 / 0 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 622 / 0 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 610 / 0 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 610 / 0 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 602 / 0 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 597 / 0 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 593 / 0 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 587 / 0 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10031388 pacid=23155962 polypeptide=Lus10031388 locus=Lus10031388.g ID=Lus10031388.BGIv1.0 annot-version=v1.0 ATGGGTTCAATGGGGCACTCGGAGAAACCAAAGCCTCATGCAGTGTGCATTCCATACCCAGCACAAGGCCACAAAACCCCAATGCTCAAGCTCGCCAAGC TCCTCCACCACCGTGGCTTCCACGTCACCTTCGTCAACACCGAGTACAACCACAACCGCCTCCGCAAATCTCAGGCCGTCTCCGACCTACCTTCGTTCCG ATTCGCCACGATCCCTGACGGCCTGCCTCCCACGGACAGCGATGTCACCCAGGACATTCCAAGCCTGTGTGAGTCCACGCGCCGGACTTGCTTGCCTCAC TTTAAGGAGCTTCTGGCGAAGCTCAACGATGTGGCGTCGTTCGAGGACGGTGTTCCGCCGGTGAGCTGTGTAGTGTCGGATGGTGTGATGAGCTTCACTC TTGATGCTGCCGAGGAATTGGGCGTCCCGGAAGTTCTGTTCTGGACTACTAGTGCTTGTGGATTCCTTGGTTATATGCACTACCGGGATTTGATCGACCG TGGCATCGTACCTCTCAAAGACGAAAGCTACTTAACGAACGGCTATCTGGACACAGTAATCGACTGGATCCCAGCAATGAGCAACATCAAGCTCAAAGAC CTCCCAACCTTCCTCCGAACCACCAACCCGGACGAATTCATGGTCGAATTCGTCCTCGGCGAAACAGAGAGATCAAGGAGTCCAAAACCCGCCGCCATAA TCCTCAACACATTCGACGCTCTGGAGCACGACGTTCTTGCGTCACTATCCAACATGCTGGCCAAACCGGTTTACTCGATCGGACCGTTGCAACTTCTGGC CAACGATCAAACCATTACGGATCCTTCCGTGAAGAACATATCTTCCAGTCTGTGGAAGGAAGAGTCGGAGTGTCTCGACTGGCTCGAAACCAAACCGAAA AATTCGGTTGTTTACGTCAATTTTGGGAGTATTACCGTGATGACGAATGATCAGTTGGTGGAATTCGCTTGGGGGTTGGCGAATAGTAAGAAGGTCTTTC TTTGGGTGATTAGGCCGGACCTTGTGGCGGGGGAGACGGCGGTTCTGCCGCCGGAGTTTGTGGCGAAGACCAGAGACAGAGGACTTCTTGCTAGCTGGTG CCCGCAGGAGCAGGTGCTGAACCACGAGTCGGTGGCGGGGTTTCTGACGCACAACGGGTGGAATTCGACCCTCGAGAGCGTGTCCGCGGGAGTTCCGATG ATCTGCTGGCCGTTCTTCGCCGAGCAGCAGACGAACTGTTGGTTTGCGTGTAACGAGTGGGGGGTTGGGATGGAGATCAACAGTGATGTGAAGAGGGACG AGGTGGAAGCGCAGGTGAGGGAGTTGGTGGATGGTCGGAAAGGTGGAGAGATGAGGAAAAAAGCGGCGGAGTGGAAGAGGATTGCGGCGGAGGCGGTGAC AGGCGGCGGCGGTTCATCTTTTGCCGGGTTGGATAGTTTGATTGAGCGTGTGCTTTTGTCTTCTTCTAGAAAATAG
AA sequence Show only first row Show all	>Lus10031388 pacid=23155962 polypeptide=Lus10031388 locus=Lus10031388.g ID=Lus10031388.BGIv1.0 annot-version=v1.0 MGSMGHSEKPKPHAVCIPYPAQGHKTPMLKLAKLLHHRGFHVTFVNTEYNHNRLRKSQAVSDLPSFRFATIPDGLPPTDSDVTQDIPSLCESTRRTCLPH FKELLAKLNDVASFEDGVPPVSCVVSDGVMSFTLDAAEELGVPEVLFWTTSACGFLGYMHYRDLIDRGIVPLKDESYLTNGYLDTVIDWIPAMSNIKLKD LPTFLRTTNPDEFMVEFVLGETERSRSPKPAAIILNTFDALEHDVLASLSNMLAKPVYSIGPLQLLANDQTITDPSVKNISSSLWKEESECLDWLETKPK NSVVYVNFGSITVMTNDQLVEFAWGLANSKKVFLWVIRPDLVAGETAVLPPEFVAKTRDRGLLASWCPQEQVLNHESVAGFLTHNGWNSTLESVSAGVPM ICWPFFAEQQTNCWFACNEWGVGMEINSDVKRDEVEAQVRELVDGRKGGEMRKKAAEWKRIAAEAVTGGGGSSFAGLDSLIERVLLSSSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	0	1
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	1.0	0.9875
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10035241 [exp]	2.8	0.9802
AT1G11300			protein serine/threonine kinas...		Lus10023391 [exp]	3.0	0.9842
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030589 [exp]	3.2	0.9857
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	3.5	0.9830
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10013594 [exp]	4.9	0.9787
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	5.1	0.9787
AT3G11920			glutaredoxin-related (.1)		Lus10030563 [exp]	5.5	0.9820
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	6.3	0.9820
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036086 [exp]	6.5	0.9782

Compare expression of checked genes

Lus10031388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.