Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42840 139 / 6e-39 PDF1 protodermal factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010941 [exp] 226 / 7e-73 AT2G42840 169 / 2e-50 protodermal factor 1 (.1) Lus10007351 [exp] 201 / 4e-63 AT2G42840 170 / 5e-51 protodermal factor 1 (.1) Lus10007352 [exp] 158 / 6e-49 AT2G42840 132 / 3e-39 protodermal factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G060800 [exp] 184 / 1e-56 AT2G42840 167 / 4e-50 protodermal factor 1 (.1) Potri.005G200900 [exp] 184 / 2e-56 AT2G42840 163 / 4e-48 protodermal factor 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031390 pacid=23155778 polypeptide=Lus10031390 locus=Lus10031390.g ID=Lus10031390.BGIv1.0 annot-version=v1.0 ATGGCATCTTTACCCTTTTCAGGCTTCACCAGCATCATGCTTGAGGAAAGTTGGATGATTCTCACCAGATCAAGATTGAAGTCTGGAACCAGTTTAACCG CCTCTGCTACTTCCTCTGCCTCCAACCTGATCGGAGAGCAGAAGAACTACTACCCCCCAGACCCATCACATTCCGGCACTCCCCCTACCCCTCCATCAGG CTCACACACTCCTTCAACGCCATCCCACGGTAGCCACTCACCCCCGCACCACAACACACCCTCTCACAGAGGCGGCTACCATCCCACTCCGTCAAATCCT CCGTCTGCAAACTGTGGGACCCCACCCTCTGTCCCAACGCCGTCAACTCCGACCCCCTATGTCCCAACTCCGTCTACTCCGACCCCCTCTGTTCCGACTC CGATTGATCCGTCAACGCCACCACCTTCCGGCGGCGGCGGATATTACCCTTCTCCTAGTACTCCACCAAGCGGAGGCGGCGGAATTCTCACTCCTCCGAC GCCCATCATCGGCGGCAGCCCGCCGAGGACTCCTTCATCACCTCCGTTTGTCATTGACCCTAACTCACCCTTCTCGTGCAACTACTGGAGGAGCCACCCG GCGATCATATGGGGAGTGCTAGGATGGTGGGGGACGCTGGGCAGCGCATTCGGAGTTCCGACCGTGCCTGGTTTCGGAGCATCGACGAGCCTCCCTCAAG CGCTCTCCAACACTCGAAACGATGGCTACGGACGCCTCTACAGAGAAGGAACCGCGGCGTTGCTCAACTCGATGGTGAGCCGTAGGTTCGCGTTCACGAC GAACCAAGTGAGGGAGAGCTTCGTCTCGGCGCTTGCTTCGAACAAGGCGGCGGCTGCTCAGGGACACGTGTTCCAGATGGCCAATGAAGGACGACTCAAG CCCAGAAATTAG
AA sequence Show only first row Show all	>Lus10031390 pacid=23155778 polypeptide=Lus10031390 locus=Lus10031390.g ID=Lus10031390.BGIv1.0 annot-version=v1.0 MASLPFSGFTSIMLEESWMILTRSRLKSGTSLTASATSSASNLIGEQKNYYPPDPSHSGTPPTPPSGSHTPSTPSHGSHSPPHHNTPSHRGGYHPTPSNP PSANCGTPPSVPTPSTPTPYVPTPSTPTPSVPTPIDPSTPPPSGGGGYYPSPSTPPSGGGGILTPPTPIIGGSPPRTPSSPPFVIDPNSPFSCNYWRSHP AIIWGVLGWWGTLGSAFGVPTVPGFGASTSLPQALSNTRNDGYGRLYREGTAALLNSMVSRRFAFTTNQVRESFVSALASNKAAAAQGHVFQMANEGRLK PRN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	0	1
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	1.0	0.9824
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	2.0	0.9786
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10028181 [exp]	2.2	0.9709
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031689 [exp]	2.4	0.9761
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10038071 [exp]	2.8	0.9731
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10009790 [exp]	3.5	0.9604
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	5.9	0.9589
AT3G05470			Actin-binding FH2 (formin homo...		Lus10004505 [exp]	6.9	0.9582
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018520 [exp]	7.9	0.9573
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039362 [exp]	8.1	0.9487

Compare expression of checked genes

Lus10031390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.