Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23730 383 / 5e-135 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 381 / 2e-134 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57560 375 / 4e-132 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G25810 359 / 1e-125 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57550 358 / 5e-125 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G30270 348 / 1e-121 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57540 337 / 1e-116 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT5G57530 336 / 2e-116 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT2G18800 335 / 9e-116 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1) AT4G25820 334 / 1e-115 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010938 [exp] 583 / 0 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10031393 [exp] 573 / 0 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 567 / 0 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010936 [exp] 530 / 0 AT3G23730 382 / 2e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10003048 [exp] 525 / 0 AT3G23730 380 / 7e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10034098 [exp] 514 / 0 AT3G23730 376 / 5e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 439 / 6e-157 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 436 / 9e-156 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020772 [exp] 436 / 1e-155 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G201250 [exp] 443 / 1e-158 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 440 / 3e-157 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 439 / 5e-157 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 421 / 5e-150 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 402 / 1e-142 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 395 / 8e-140 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.011G077320 [exp] 384 / 4e-135 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.018G095100 [exp] 371 / 2e-130 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 368 / 5e-129 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G005700 [exp] 369 / 1e-128 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10031392 pacid=23155926 polypeptide=Lus10031392 locus=Lus10031392.g ID=Lus10031392.BGIv1.0 annot-version=v1.0 ATGGCGACTCTGCCTCTGATAATGTCGACATTGGTACTGTTGGGTCATTTAACGGCCATCACAAATGCAAACTTCCACCAGCATTTCGATATCACATGGG GGCAGCACCATGCTCAGATCATGAACACCGGTCAGCAGTTGACCCTCTCGCTCGACAAGGATTCCGGAGCCGGATTCAAGTCCAAAAACGAGTATCTTTT CGGCCGTATTGATATGCAACTCAAGCTCATCGCCGGCAACTCCGCTGGGAGTGTCACTACCTTTTATTTGTCGTCGGAAGGACCGAACCACGATGAAATC GACTTCGAATTCCTTGGCAATTCGACCGGAAACCCTTACACTCTCCACACCAACGTGTTCAGCCAAGGGAAAGGCAACAGAGAACAGCAATTCCACCTTT GGTTCGACCCAACTGCCGCTTTCCACACCTACACCATCCTCTGGAATTCCCAACGAATCATATTCTTGGTGGACAACATCCCCATCAGAGTGTTCAACAA CTTAGAATCAATGGGAGTGCCATTCCTAAACAAGCAGCCAATGAGCATTCACTCTAGCTTATGGAACGCCGACGACTGGGCTACCCAAGGCGGCCGAGTG AAGGCTGATTGGACCAAAGCTCCCTTCATAGCTTCTTACAGGAACTTCAAAGCAGAAGCTTGTGTTTGGTCGCCGTCCTCTGCTTCTTCAACGTGCACTC CGGGAGCATGGCAGACACAGGGGATCGATGCCGCCGGCCGGAATAGGATCCGGTGGGTGCAGAGTAAATATATGATCTATAATTACTGCACTGACTTGAA ACGATTCCCTCAAGGAGTTCCAGTTGAATGCAAGCAGACCAGATTCCTTTGA
AA sequence Show only first row Show all	>Lus10031392 pacid=23155926 polypeptide=Lus10031392 locus=Lus10031392.g ID=Lus10031392.BGIv1.0 annot-version=v1.0 MATLPLIMSTLVLLGHLTAITNANFHQHFDITWGQHHAQIMNTGQQLTLSLDKDSGAGFKSKNEYLFGRIDMQLKLIAGNSAGSVTTFYLSSEGPNHDEI DFEFLGNSTGNPYTLHTNVFSQGKGNREQQFHLWFDPTAAFHTYTILWNSQRIIFLVDNIPIRVFNNLESMGVPFLNKQPMSIHSSLWNADDWATQGGRV KADWTKAPFIASYRNFKAEACVWSPSSASSTCTPGAWQTQGIDAAGRNRIRWVQSKYMIYNYCTDLKRFPQGVPVECKQTRFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10031392 [exp]	0	1
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10031393 [exp]	1.0	0.9291
					Lus10011061 [exp]	19.0	0.7782
					Lus10022145 [exp]	23.2	0.7782
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	26.8	0.7782
					Lus10024550 [exp]	30.0	0.7782
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10001280 [exp]	32.9	0.7782
AT5G46795		MSP2	microspore-specific promoter ...		Lus10004566 [exp]	35.5	0.7782
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10010756 [exp]	37.9	0.7782
					Lus10010778 [exp]	40.2	0.7782
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10012337 [exp]	42.4	0.7782

Compare expression of checked genes

Lus10031392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.