Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23730 387 / 1e-136 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 384 / 3e-135 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57560 381 / 3e-134 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G25810 365 / 9e-128 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57550 362 / 8e-127 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G30270 355 / 2e-124 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57540 339 / 7e-118 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT5G57530 339 / 8e-118 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT5G48070 338 / 2e-117 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1) AT4G25820 338 / 4e-117 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010939 [exp] 577 / 0 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031392 [exp] 573 / 0 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 570 / 0 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10010936 [exp] 538 / 0 AT3G23730 382 / 2e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10003048 [exp] 531 / 0 AT3G23730 380 / 7e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10034098 [exp] 525 / 0 AT3G23730 376 / 5e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 443 / 1e-158 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 440 / 2e-157 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020772 [exp] 440 / 3e-157 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G201250 [exp] 452 / 3e-162 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 447 / 4e-160 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 444 / 5e-159 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 424 / 5e-151 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 412 / 3e-146 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 405 / 1e-143 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.011G077320 [exp] 387 / 1e-136 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.018G095100 [exp] 374 / 1e-131 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.013G005700 [exp] 375 / 6e-131 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 372 / 2e-130 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10031393 pacid=23156016 polypeptide=Lus10031393 locus=Lus10031393.g ID=Lus10031393.BGIv1.0 annot-version=v1.0 ATGGCGATCGGCAGTACTCTGCCTCTGGTAATGTTAGTGGTGTTGGTGTGTCATCTAACGGCCATCTCAAATGCAAACTTCCACCAGCATTTCGACGTCA CATGGGGTCAGCACCATGCTCAGATCATGAACACCGGCCAGCAGTTGACCCTCTCCCTCGACAAGGATTCCGGTGCCGGATTCAAGTCCAAAAACGAGTA TCTTTTCGGCCGTATCGATATGCAACTCAAGCTCATAGCCGGCAACTCCGCCGGAAGTGTCACCACATTTTATTTGTCGTCAGAAGGACCGAACCACGAT GAAATCGACTTCGAATTCCTTGGCAATTCCACCGGAAACCCTTACACTCTCCACACCAATGTGTTCAGCCAAGGAAAAGGTAACAGAGAACAACAATTTC ACCTCTGGTTCGACCCAACTGCCGCTTTCCACACCTACACCATCCTCTGGAATTCCCAACGAATCATATTCTTGGTGGACAACATCCCCATCAGAGTGTT CAACAACTTGGAATCAATGGGAGTGCCATTCCCAAACAAGCAGCCGATGAGCATTCACTCTAGCTTATGGAACGCCGATGACTGGGCTACCCAAGGCGGC CGAGTGAAGGCTGATTGGACCAAAGCTCCCTTCATAGCTTCTTACAGGAACTTCAAAGCAGAAGCTTGTGTTTGGTCGCCGTCCTCTGCTTCTTCAACGT GCACTCCGGGAGCATGGCAGACACAGGGGATCGATGCCGCCGGCCGGAATAGGATCCGGTGGGTGCAGAGTAAATATATGATCTATAATTACTGCACTGA CTTGAAACGATTCCCTCAAGGAGTTCCAGTTGAATGCAAGCAGACCAGATTCCTTTAA
AA sequence Show only first row Show all	>Lus10031393 pacid=23156016 polypeptide=Lus10031393 locus=Lus10031393.g ID=Lus10031393.BGIv1.0 annot-version=v1.0 MAIGSTLPLVMLVVLVCHLTAISNANFHQHFDVTWGQHHAQIMNTGQQLTLSLDKDSGAGFKSKNEYLFGRIDMQLKLIAGNSAGSVTTFYLSSEGPNHD EIDFEFLGNSTGNPYTLHTNVFSQGKGNREQQFHLWFDPTAAFHTYTILWNSQRIIFLVDNIPIRVFNNLESMGVPFPNKQPMSIHSSLWNADDWATQGG RVKADWTKAPFIASYRNFKAEACVWSPSSASSTCTPGAWQTQGIDAAGRNRIRWVQSKYMIYNYCTDLKRFPQGVPVECKQTRFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10031393 [exp]	0	1
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10031392 [exp]	1.0	0.9291
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10038655 [exp]	5.1	0.8209
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	7.3	0.8049
					Lus10001343 [exp]	7.7	0.7986
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033564 [exp]	8.4	0.7795
AT2G44060			Late embryogenesis abundant pr...		Lus10019367 [exp]	9.2	0.7770
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10023601 [exp]	12.3	0.7628
AT2G18980			Peroxidase superfamily protein...		Lus10001622 [exp]	14.0	0.7265
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10005334 [exp]	14.8	0.7335
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	15.1	0.7330

Compare expression of checked genes

Lus10031393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.