Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06530 84 / 2e-18 PMD2 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) AT3G58840 82 / 8e-18 PMD1 peroxisomal and mitochondrial division factor 1, Tropomyosin-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010937 [exp] 389 / 2e-136 AT3G58840 140 / 3e-39 peroxisomal and mitochondrial division factor 1, Tropomyosin-related (.1.2) Lus10007347 [exp] 192 / 2e-59 AT3G58840 148 / 3e-42 peroxisomal and mitochondrial division factor 1, Tropomyosin-related (.1.2) Lus10020770 [exp] 187 / 2e-57 AT1G06530 147 / 6e-42 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) Lus10013266 [exp] 56 / 1e-09 ND / Lus10030789 [exp] 56 / 2e-09 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G201400 [exp] 137 / 3e-38 AT1G06530 144 / 8e-41 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1) Potri.002G060200 [exp] 133 / 1e-36 AT1G06530 91 / 5e-21 peroxisomal and mitochondrial division factor 2, Tropomyosin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031394 pacid=23155773 polypeptide=Lus10031394 locus=Lus10031394.g ID=Lus10031394.BGIv1.0 annot-version=v1.0 ATGGCGGATGAGAAGGTGAACACTGAGACTAACGGTGTTACGACTCCGACGGAGGAGGAGAATCACAAGACAGTGACAATCGAGAGTTCCGACGGTGTTG GCGATGACAGCAGCGAAGAAGTGAAGCTGAAGAACAAGATTGAAGCGCTAGAGAGTAGGAATGGGTCTCTAATCGAGGAGAATGATGGATTCAAGAACCA GATTCTAAAGCTGACGGAGGAGATCGAGTCACTGAAATCCGAATCGCTGGAGGAGAGGCTCGAGGAAGTGGAGAACGAGCTAGAGCGGTCGGAAAATAGC AGGAAAACTCTCGAATCCATAGCGGAAAGAGCCGAGCAGCTAGAATCGGAGGTTTCGAGACTGCAGCGGGATCTGATAGCGTCGATGAGCCAGGGCGACG AATACAACGCCGAGATCGTCGAGTTGAGGAAGGAGATAGCGGTTATGGAAGCTAAAGTCCAGGAGGCGTGGAAAGAGAAGGGAGAGAACGATAAGCGAGT AAGGGAGCTTGAGAAGAAGGTCGGCGTTCTGCAGATGAAGGAGATCGAAGACAAGAGTAAGAAGATCAGAATGGAGGAAGAGACTAGAGACCAAATCGCT GAGAAAGAAGCTCAGATGGAGAAGTACAAGAAGAGGATCGAGGAGTTGCAGAAGGAGCTGGATGAGAAGCCTGATCTTACGGAGGAACTTAAGGTCTCGG AGAACAGGACGAAGGAGATGGAATCTAAGATGGCGGAGTTGCAGAAGCAAGCGGAGGAGGCTGAGAAAGCGATCCTCACTCTGAAACAGAGAGCTTACGA GAGTATCAATGGATTCGACAGTGAAGACAGTGAGGATAAAGAGCTGAGTGTCCAGTGGCCGGTAGTGGTGATTGGATCCACTGGAGCTGTCGTTGCTGCA GCAGCAGTTGCTTATCTCGTTTATGCAAGGAGACAGTGA
AA sequence Show only first row Show all	>Lus10031394 pacid=23155773 polypeptide=Lus10031394 locus=Lus10031394.g ID=Lus10031394.BGIv1.0 annot-version=v1.0 MADEKVNTETNGVTTPTEEENHKTVTIESSDGVGDDSSEEVKLKNKIEALESRNGSLIEENDGFKNQILKLTEEIESLKSESLEERLEEVENELERSENS RKTLESIAERAEQLESEVSRLQRDLIASMSQGDEYNAEIVELRKEIAVMEAKVQEAWKEKGENDKRVRELEKKVGVLQMKEIEDKSKKIRMEEETRDQIA EKEAQMEKYKKRIEELQKELDEKPDLTEELKVSENRTKEMESKMAELQKQAEEAEKAILTLKQRAYESINGFDSEDSEDKELSVQWPVVVIGSTGAVVAA AAVAYLVYARRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Lus10031394 [exp]	0	1
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10023619 [exp]	4.6	0.7944
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10002865 [exp]	6.6	0.8166
AT4G02450			HSP20-like chaperones superfam...		Lus10000340 [exp]	8.3	0.8247
					Lus10003882 [exp]	11.2	0.7263
AT2G33410			RNA-binding (RRM/RBD/RNP motif...		Lus10043124 [exp]	12.6	0.8080
AT2G39170			unknown protein		Lus10018298 [exp]	15.9	0.6982
AT5G10550		GTE2	global transcription factor gr...		Lus10020471 [exp]	18.6	0.7725
AT3G16190			Isochorismatase family protein...		Lus10006833 [exp]	19.4	0.7798
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10003330 [exp]	20.0	0.7075
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10016543 [exp]	21.0	0.7807

Compare expression of checked genes

Lus10031394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.