Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42910 578 / 0 Phosphoribosyltransferase family protein (.1) AT1G10700 487 / 3e-173 PRS3 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) AT2G35390 77 / 1e-15 Phosphoribosyltransferase family protein (.1.2.3) AT1G32380 74 / 1e-14 PRS2 phosphoribosyl pyrophosphate (PRPP) synthase 2 (.1) AT2G44530 74 / 2e-14 Phosphoribosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010935 [exp] 675 / 0 AT2G42910 572 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10020768 [exp] 619 / 0 AT2G42910 582 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10007345 [exp] 615 / 0 AT2G42910 579 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10006202 [exp] 474 / 3e-168 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10036849 [exp] 473 / 6e-168 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10012074 [exp] 80 / 1e-16 AT2G44530 605 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10040098 [exp] 74 / 4e-14 AT2G35390 639 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10030948 [exp] 63 / 7e-11 AT2G35390 613 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10027908 [exp] 63 / 9e-11 AT2G44530 555 / 0.0 Phosphoribosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G059700 [exp] 571 / 0 AT2G42910 575 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.005G202100 [exp] 567 / 0 AT2G42910 565 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.010G045000 [exp] 496 / 6e-177 AT1G10700 566 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Potri.014G179600 [exp] 82 / 3e-17 AT2G44530 628 / 0.0 Phosphoribosyltransferase family protein (.1.2) Potri.001G145700 [exp] 82 / 3e-17 AT2G35390 657 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.003G088400 [exp] 79 / 3e-16 AT2G35390 655 / 0.0 Phosphoribosyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10031395 pacid=23155943 polypeptide=Lus10031395 locus=Lus10031395.g ID=Lus10031395.BGIv1.0 annot-version=v1.0 ATGGATTCCAACAGCACAAATTCGATCGGAAATGTTCTGCAGACGCAGCGGCGGCAACACAACAAACAAGTACTTCTATTCTACTGCCTAGAGTGTGAGG AGCTCGCCCGTAAGATCGCCGCCACTTCCGACCTCGTCACTCTTCAGTCCATCAATTGGAGGAGTTTCCAGGATGGATTCCCCAACCTATATATAAACAA TGCACACGACATAAGGGGTCAACATGTAGCATTTCTTGCTTCCTTCAGCTCACCATCGGTGATCTTTGAGCAGCTTTCGGTCATATATGCACTTCCACGT CTGTTCGTCGCTTCGTTCTCGTTGGTATTGCCTTTCTTCCCCACTGCCACCTTCGAGCGGATGGACGAAGAAGGGGATGTTGCAACGGCGTTCACCCTCG CTAGGATACTGTCCAATATTCCCATATCGAGAGGCGGCCCGACTAGCTTAGTTGTCTATGATATACATGCTCTCCAGGAGAGATTTTACTTCGGGGACCA TGTATTGCCTTTGTTCGAGACTGGGATTCCTCTGTTAAAGCAACGGCTTAATCAGCTTCCTGGATCTGACAAGATTGTGATTGCATTTCCTGATGATGGA GCATGGAAGCGGTTCCACAACCTGTTGGATGACTACCCAACTGTGGTCTGCAACAAAGTCCGTGAAGGTGACAAGAGGATAGTAAGGATTAAGGAAGGCA ACCCTGCTGGCTGTCATGTCGTCATAGTTGATGATCTGGTGCAGTCGGGTGGTACCCTTATCGAATGTCAGAAAGTGCTGGCAGCTCACGGTGCAGCGAA AGTAAGTGCTTATGTTACTCATGGTGTGTTTCCAAAGCGATCCTGGGAGCGATTCACTCATAAAAACGATGGTCTGGAGAAAGCATTTGACTACTTCTGG ATCACTGATTCTTGCCCTGGAACCGTCAATGCCGTTGCAAACAAAGCTCCGTTCGAAGTTCTGAGTCTCGCTGGATCCATCGCTGACGCCCTCCAGATCT AA
AA sequence Show only first row Show all	>Lus10031395 pacid=23155943 polypeptide=Lus10031395 locus=Lus10031395.g ID=Lus10031395.BGIv1.0 annot-version=v1.0 MDSNSTNSIGNVLQTQRRQHNKQVLLFYCLECEELARKIAATSDLVTLQSINWRSFQDGFPNLYINNAHDIRGQHVAFLASFSSPSVIFEQLSVIYALPR LFVASFSLVLPFFPTATFERMDEEGDVATAFTLARILSNIPISRGGPTSLVVYDIHALQERFYFGDHVLPLFETGIPLLKQRLNQLPGSDKIVIAFPDDG AWKRFHNLLDDYPTVVCNKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPKRSWERFTHKNDGLEKAFDYFW ITDSCPGTVNAVANKAPFEVLSLAGSIADALQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42910			Phosphoribosyltransferase fami...		Lus10031395 [exp]	0	1
AT1G54250		NRPE8A, NRPB8A,...	RNA polymerase Rpb8 (.1)		Lus10013760 [exp]	2.6	0.8108
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Lus10031724 [exp]	6.6	0.7687
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10019794 [exp]	15.9	0.7844
AT5G09570			Cox19-like CHCH family protein...		Lus10007086 [exp]	16.2	0.7950
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	18.8	0.7867
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	20.5	0.7927
AT3G50300			HXXXD-type acyl-transferase fa...		Lus10031725 [exp]	20.7	0.8103
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	27.9	0.7814
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10010354 [exp]	28.4	0.7901
AT3G19895			RING/U-box superfamily protein...		Lus10034201 [exp]	28.4	0.7645

Compare expression of checked genes

Lus10031395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.