Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06520 579 / 0 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT4G01950 413 / 6e-139 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT1G01610 402 / 9e-135 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT1G02390 402 / 2e-134 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT2G38110 396 / 1e-132 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT4G00400 385 / 2e-128 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT3G11430 383 / 1e-127 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT5G06090 376 / 7e-125 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT3G11325 214 / 9e-64 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010934 [exp] 959 / 0 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10020767 [exp] 698 / 0 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10010741 [exp] 433 / 8e-147 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10036684 [exp] 429 / 3e-145 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10002500 [exp] 393 / 2e-131 AT2G38110 683 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10001449 [exp] 383 / 5e-127 AT4G01950 517 / 2e-180 glycerol-3-phosphate acyltransferase 3 (.1) Lus10029839 [exp] 375 / 9e-125 AT4G01950 449 / 9e-155 glycerol-3-phosphate acyltransferase 3 (.1) Lus10002421 [exp] 377 / 1e-124 AT4G01950 514 / 2e-179 glycerol-3-phosphate acyltransferase 3 (.1) Lus10004711 [exp] 365 / 1e-120 AT3G11430 743 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202200 [exp] 679 / 0 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.016G063900 [exp] 438 / 8e-149 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.002G192600 [exp] 439 / 1e-148 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1) Potri.006G198100 [exp] 429 / 3e-145 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 418 / 3e-141 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G097800 [exp] 411 / 1e-138 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.010G201200 [exp] 397 / 3e-133 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.014G085500 [exp] 396 / 1e-132 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1) Potri.008G058200 [exp] 390 / 3e-130 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10031396 pacid=23155843 polypeptide=Lus10031396 locus=Lus10031396.g ID=Lus10031396.BGIv1.0 annot-version=v1.0 ATGGTGTTCCACATAGTGCTCCTCAAGCTAGTGGAATGGGTTGTCTACCAACTCCTAGCCAATTCCTGCTACAAAGCTGCCAAAAAGGTCAGCAGCTACT TCTTCTCTAGACCAAACCCATCTCCAAAGTCCAATCCTTTCTCCCATTCCACATCATCCAACCATCTGAGGTCCAATCCTTACCCTAGCGTCGCAAAGTT CGTCCGACAGGGCGAAAAGATCGAATCTTTAGTCGTATTCGACATCCAGGGGACTCTGCTCCGCACCGATTCCTTCTTCCCTTACTTCATGCTGGTGGCC TTCGAAGGAGGCAGCATTTTCAGGGCCTTCATACTTCTGATAACTTACCCTCTCACTTTCCTGTTCATGGATGCTGATCTCCAGCTGAAAGCCATGATCT TTGTGACGTTTTTCGGGTTGCGAGTCAAGGACATGGAGAATGTTTCCAGGGCTGTTCTGACCAAGTTCTTCCTGGAGAATCTTGACTATCAGGTTTACAA GATTCTTCAGGATTCTGGAGAATCTGTGACTGTTGTGACAAGTGTTCCTAGGGTTATGGTGGAGCTTTTTCTGAAGGAGTATTTGGGTGTTGGGAATGTT GTCGGGACTGAGTTGGGACAGGTTTCGAGACCAGGTGGGAAGAAAGGTGGTTACTTTACTGGTTTTGTTTCTGGGGAGGGTGTTGTGTCGAAGCATAGAG CTGTTCTGGATTTGTTTGGCGACAAGAAACCTGATGTTGGAATTGGATCTTCTTCTTCTTGTTGTTATTCCTCCTCTCATCAGGATTCTCTGTTCCTTTC TCTATGCAAGGAAGGGTATGTGGTAAACAAGGAAGATAGCAAGAGTTCAGCTTCAGAAACACCAAGAGACAAATATCCAAAACCACTAGTCTTCCATGAC GGCCGCCTAGCATTCCTCCCGACGCCGGCCGCCACATCAGCGATGTTCCTCTGGCTCCCATTCGGAATCTTTCTCGCCGTGTTCCGCCTCCTCATCGGAA CTCTCCTCCCTTACCGAGTGGCACTCTTCCTCGGCGCAGTAAGCGGAATCGACATCCGATTCCACGACACTCGAATTCGGAAAAAAACCGAACACACCGA CAAAAAAAATGGTGGCGTTTTATACGTTTGCACCCACCGGACTTTACTCGACCCAGTTTTCCTATCCACCTGCCTTAGGAAACCCCTCACGGCCGTGACA TACAGCCTCAGTAAGATGTCGGAGCTGATCGCCCCGATCAAAACCGTCCGCCTGACCCGTGAGCGCCGCACCGACGGCAACACGATGCAGAGGATGCTCC GGGAAGGCGATCTCGTCGTCTGCCCCGAAGGGACCACTTGCCGCGAGCCTTACCTCCTCCGATTCAGCTCCCTGTTCGCCGAGCTCAGCGATGAGATCGT TCAGGTGGACGTCGACACGTCGGTCCGGTTGTTCTACGGGACGACGGCGAGCGGGTTGAAGAGTCTGGACCCGATTTTTTTCCTGATGAATCCGAGGCCC AGGTACTGGATCCGGGTGCTGGAAAAGCTGCCGGCGGAGATGAGCTGCGGCGGCGGTGGGAAATCGAGCTCCGAAGTGGCGAATTACATACAGAGGCAGC TGGCGGCGGCGCTTGGGTTCGAGTGTACGTCGCTTACGAGGAGGGATAAGTATTTGATGCTTGCCGGTAACGAAGGGATCGTCGCCGATTCCTCGAATTC GAAGCAAGCTTTGGTTTCTTGA
AA sequence Show only first row Show all	>Lus10031396 pacid=23155843 polypeptide=Lus10031396 locus=Lus10031396.g ID=Lus10031396.BGIv1.0 annot-version=v1.0 MVFHIVLLKLVEWVVYQLLANSCYKAAKKVSSYFFSRPNPSPKSNPFSHSTSSNHLRSNPYPSVAKFVRQGEKIESLVVFDIQGTLLRTDSFFPYFMLVA FEGGSIFRAFILLITYPLTFLFMDADLQLKAMIFVTFFGLRVKDMENVSRAVLTKFFLENLDYQVYKILQDSGESVTVVTSVPRVMVELFLKEYLGVGNV VGTELGQVSRPGGKKGGYFTGFVSGEGVVSKHRAVLDLFGDKKPDVGIGSSSSCCYSSSHQDSLFLSLCKEGYVVNKEDSKSSASETPRDKYPKPLVFHD GRLAFLPTPAATSAMFLWLPFGIFLAVFRLLIGTLLPYRVALFLGAVSGIDIRFHDTRIRKKTEHTDKKNGGVLYVCTHRTLLDPVFLSTCLRKPLTAVT YSLSKMSELIAPIKTVRLTRERRTDGNTMQRMLREGDLVVCPEGTTCREPYLLRFSSLFAELSDEIVQVDVDTSVRLFYGTTASGLKSLDPIFFLMNPRP RYWIRVLEKLPAEMSCGGGGKSSSEVANYIQRQLAAALGFECTSLTRRDKYLMLAGNEGIVADSSNSKQALVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10031396 [exp]	0	1
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10010934 [exp]	1.0	0.8754
AT5G60880		BASL	breaking of asymmetry in the s...		Lus10034654 [exp]	14.0	0.7665
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10022277 [exp]	15.2	0.7997
AT1G27460		NPGR1	no pollen germination related ...		Lus10018679 [exp]	23.3	0.7614
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020559 [exp]	23.8	0.7558
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10031127 [exp]	25.8	0.7562
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	32.5	0.7658
AT3G15570			Phototropic-responsive NPH3 fa...		Lus10030390 [exp]	38.0	0.7212
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10001814 [exp]	43.6	0.6631
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10002524 [exp]	45.0	0.7398

Compare expression of checked genes

Lus10031396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.