Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56140 337 / 6e-105 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 335 / 2e-104 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 328 / 1e-101 Leucine-rich repeat transmembrane protein kinase (.1) AT4G21390 304 / 5e-94 B120 S-locus lectin protein kinase family protein (.1) AT1G56145 305 / 2e-93 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G16670 286 / 2e-92 Protein kinase superfamily protein (.1) AT1G70520 294 / 5e-92 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT1G53440 300 / 3e-91 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 299 / 4e-91 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G70740 283 / 9e-91 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010927 [exp] 756 / 0 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10020688 [exp] 637 / 0 AT1G56140 323 / 1e-101 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 331 / 8e-103 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10003711 [exp] 313 / 8e-103 AT1G70740 502 / 2e-178 Protein kinase superfamily protein (.1.2) Lus10001595 [exp] 312 / 6e-102 AT1G70740 518 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010960 [exp] 311 / 1e-99 AT1G70520 373 / 2e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Lus10011193 [exp] 289 / 1e-93 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10042460 [exp] 289 / 2e-93 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10038940 [exp] 288 / 8e-93 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132900 [exp] 564 / 0 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.006G071300 [exp] 555 / 0 AT1G56140 334 / 3e-105 Leucine-rich repeat transmembrane protein kinase (.1) Potri.007G067900 [exp] 335 / 4e-104 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G082900 [exp] 328 / 9e-102 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.010G109700 [exp] 311 / 1e-101 AT1G70740 523 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G276600 [exp] 318 / 2e-101 AT1G70520 373 / 8e-121 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) Potri.003G148000 [exp] 327 / 4e-101 AT1G56145 1063 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.008G132300 [exp] 305 / 3e-99 AT1G70740 499 / 6e-177 Protein kinase superfamily protein (.1.2) Potri.004G040200 [exp] 301 / 2e-98 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.017G141400 [exp] 308 / 3e-97 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10031401 pacid=23156014 polypeptide=Lus10031401 locus=Lus10031401.g ID=Lus10031401.BGIv1.0 annot-version=v1.0 ATGGAAGATAGCAGAATAACCGTCTTGGTGAATAGTTCGATGGTAAAATGGATATTAACCCAAAGCTTTGGCCAGTTCGCCCGCCTCCGATTCTCCCTAT GTCTTTGTTTCTTTAGTTTACCAATCCCCATTCACCTCCTCCTATGGTTTCTTCTCCATCTCATTTCCCTTTCCTCCCTCCGCCGCCATTGTTTCTCTCC AATGGTTCGCCGGATTCTGCAAGTGGCGGCGAATCCTCCTCCTCCTGGCCAGTCTCGCGGCGGCGGCGGTTTTGCTCCTATGAGTTCGTCGGCGTTGTTC TTCTTCGCCGGAGTTCTGGTCGTGCTCGTTATACTGATGATCATCATCACCATCTTCTGGAAGTTCGTCAAGTTGAACGACATCACTGATCAGTTGGTCA TCAAGACTGATAAGTTGCTTCGAGGAGTGGCATCTGAAGTAATGAGCGGGACATTGCGAACAATCAGTTACTTCGATTACCAGACACTGAAGAAGGCAAC CAAGAACTTCCACCCTGATAATCTACTAGGGAGAGGCGGATTCGGACCGGTTTATCGGGGGAAGTTGAGAGACGGTCGAACGGTGGCGGTGAAACGGCTA TCACTGGAGAAATCACAACAAGGCGAGTCGGAGTTTTTGTCGGAGGTGAGGATGATCACGAGCATACAACACAAGAACCTCGTCCGGCTCCTCGGATGTT GTTCCGACGGGGAACAACGGTTGCTTGTCTATGAGTACATGAAGAACGGGAGCTTGGATCTTCTAGTCTATGTTTCTGATGAATGGTGGAAAGTTGATCC TACAGGGAATAGCAATCAGTTCATGGATTGGAACACGAGGTTCCGGATAATACTCGGAATTGCTCGCGGGCTGCAATACCTGCACGAAGATTCGCCACTG AGAATCGTTCATCGAGACATTAAAGCAAGCAATGTTCTCCTTGATGACAAGTACCAGCCGCGGATCAGTGATTTCGGACTGGCCAGGTTCTTCCCTGAAG ACCAGGCTTATCTCAGCACCACATTTGCTGGAACACTGGGATACACAGCTCCCGAATATGCGATCAGAGGCGAGTTGTCAGAGAAGGCAGATATCTACAG CTTCGGAGTGTTGGCACTCGAGATCATATGCTGTAGGAAGAACACAGATCTCAGCTTATCAACAGAACAACAGTATCTTCCTGAATACGCGTGGAAGCTG TACGAGAAGAACAAGGTGAACGAGCTGATAGATCCGAAGCTTCGACAGCAAGGGATCGCGGAAAGAGAAGTGGTGCACGTGATTCACGTAGCTTTCTTGT GCCTTCAGCCGCTCGCGAACCTGAGGCCGCCAATGTCTGAAGTCGTGGCGATGCTGACACACAAAGTCGAGGCAGGAGCGACGCCCATAAAGCCTGTGTT CTTGGTGGACAGCAGGAGGAGAGCAACAGAAGGCAGCTTCTCTTGGGATGTTATATCCGAGGCTTTCCCTTCTCCTTTCCGGAGTCTCGAATCTCACGCT GCATCATCTCAGGCAAACTGA
AA sequence Show only first row Show all	>Lus10031401 pacid=23156014 polypeptide=Lus10031401 locus=Lus10031401.g ID=Lus10031401.BGIv1.0 annot-version=v1.0 MEDSRITVLVNSSMVKWILTQSFGQFARLRFSLCLCFFSLPIPIHLLLWFLLHLISLSSLRRHCFSPMVRRILQVAANPPPPGQSRGGGGFAPMSSSALF FFAGVLVVLVILMIIITIFWKFVKLNDITDQLVIKTDKLLRGVASEVMSGTLRTISYFDYQTLKKATKNFHPDNLLGRGGFGPVYRGKLRDGRTVAVKRL SLEKSQQGESEFLSEVRMITSIQHKNLVRLLGCCSDGEQRLLVYEYMKNGSLDLLVYVSDEWWKVDPTGNSNQFMDWNTRFRIILGIARGLQYLHEDSPL RIVHRDIKASNVLLDDKYQPRISDFGLARFFPEDQAYLSTTFAGTLGYTAPEYAIRGELSEKADIYSFGVLALEIICCRKNTDLSLSTEQQYLPEYAWKL YEKNKVNELIDPKLRQQGIAEREVVHVIHVAFLCLQPLANLRPPMSEVVAMLTHKVEAGATPIKPVFLVDSRRRATEGSFSWDVISEAFPSPFRSLESHA ASSQAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	0	1
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	2.0	0.9729
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10018348 [exp]	5.5	0.9693
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10004222 [exp]	6.3	0.9669
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	6.5	0.9712
AT5G06130			chaperone protein dnaJ-related...		Lus10021316 [exp]	6.7	0.9524
AT2G23450			Protein kinase superfamily pro...		Lus10032741 [exp]	6.9	0.9691
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10033085 [exp]	7.5	0.9649
AT5G63970			Copine (Calcium-dependent phos...		Lus10020885 [exp]	7.5	0.9498
AT5G48060			C2 calcium/lipid-binding plant...		Lus10015709 [exp]	7.9	0.9579
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	8.1	0.9710

Compare expression of checked genes

Lus10031401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.