Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56310 210 / 1e-64 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010930 [exp] 436 / 3e-151 AT1G56310 640 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020000 [exp] 265 / 1e-85 AT1G56310 655 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031402 pacid=23155923 polypeptide=Lus10031402 locus=Lus10031402.g ID=Lus10031402.BGIv1.0 annot-version=v1.0 ATGGGGTTGGGAAAAGAGGTTCAATCGTTACATAGCGATGGAGATGAAGGCCATCCATTGTCGGCCATATCTGTGCATTCTTTCTCTGATTTAACCCACA TTTCTCCCGTGGTGTTCTTGTATCTATTGAAAGAGTGTTATGTTCATGGTACATGTAAGGCAACTAAAAAATTCAGAACTCTTCAACATCAAGTGCATCA GGTTCTATATAATTCTCCCCAGCCAGGTCCTCTTACATTTATTGGTCGATGCCTCTATGTATTGCCTGTATTTGGTGAATATTGTGATGGGTTGAGTCAC TTGATCGTATCTGCTCTTCAACGGTATCGGAAAGTAGCAAAGTCTTCAGACGACATATTGACTGCAAAAGTATTGGGGGCTCGGTTATTCATCGACATTT TGGAAGGCGTGATTCCACTCCTTGATGAAAGAATTGGGGTAAAAATACTTGGAGTTTTTCACGTCACTTCATCCGATATGGATGAGGCTATATCCAAGCT GAAGTATCAAAGACATTTTAAGTTTGACACTGGAAGAGCATTTGTTGAGCCTTACATATTTAAGTTGGTTGAGTCCCAGTCTTATATGACTGCGGTAACT TTGCTAGAACAGTTATCTATCCGAGAATCTGGTCGGTCTTTTCTCGTCAAGATGATGGATAACCATGAATATAAATATTGA
AA sequence Show only first row Show all	>Lus10031402 pacid=23155923 polypeptide=Lus10031402 locus=Lus10031402.g ID=Lus10031402.BGIv1.0 annot-version=v1.0 MGLGKEVQSLHSDGDEGHPLSAISVHSFSDLTHISPVVFLYLLKECYVHGTCKATKKFRTLQHQVHQVLYNSPQPGPLTFIGRCLYVLPVFGEYCDGLSH LIVSALQRYRKVAKSSDDILTAKVLGARLFIDILEGVIPLLDERIGVKILGVFHVTSSDMDEAISKLKYQRHFKFDTGRAFVEPYIFKLVESQSYMTAVT LLEQLSIRESGRSFLVKMMDNHEYKY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56310			Polynucleotidyl transferase, r...		Lus10031402 [exp]	0	1
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10039828 [exp]	1.7	0.8411
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10000266 [exp]	2.4	0.8400
AT5G15270			RNA-binding KH domain-containi...		Lus10030689 [exp]	14.7	0.8105
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10009218 [exp]	21.4	0.7956
AT2G46200			unknown protein		Lus10000549 [exp]	22.6	0.8090
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Lus10038072 [exp]	40.1	0.7669
AT1G73970			unknown protein		Lus10036972 [exp]	41.7	0.7536
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	47.5	0.7427
AT2G24530			unknown protein		Lus10026225 [exp]	47.7	0.7343
AT3G50430			unknown protein		Lus10022468 [exp]	51.4	0.7487

Compare expression of checked genes

Lus10031402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.