Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56310 283 / 1e-91 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G24340 51 / 4e-07 3'-5' exonuclease domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010930 [exp] 466 / 7e-162 AT1G56310 640 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022376 [exp] 56 / 1e-08 AT5G24340 544 / 0.0 3'-5' exonuclease domain-containing protein (.1) Lus10029478 [exp] 44 / 6e-05 AT5G48350 82 / 2e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020000 [exp] 351 / 2e-118 AT1G56310 655 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.015G009500 [exp] 50 / 7e-07 AT5G24340 679 / 0.0 3'-5' exonuclease domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF01612 [flax] [poplar] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Lus10031403 pacid=23155839 polypeptide=Lus10031403 locus=Lus10031403.g ID=Lus10031403.BGIv1.0 annot-version=v1.0 ATGGGCAACATTTATGGGCAAGCAAATGCTGTGTTCACACTAGTACAAGAATACGTTGATAGGAAGTTGTTGAAGCAAGCATATGACATTATTAAGAAAA ACGACCTAAAGCAGGAGTTCCCAGTGGTATACCTTAAATGTAAAGAAAGCTCGCTGAAGAAATTTGCAGAGAAAGCACTGTGGGATGTTGCGGAAGCTAA GACGCATGGTGACAGGCAACTCCTTGAGTATCTGGTTTACTTGGCATTGGAGGCTGGTTACACAGAGAAAGTGGATGAACTATGTGAACGATACTCCCTT GAAGGTTTTCGAAAACTCACAGCAGAACCGGAGATTAGTAGCACTCAGCACAGTAGATACCTGCATCTGAACGAGTTAATCACCAACGACGTTGTTTGGG TTGACGAAGCTGACAGTTTGTATGACGCCACGTCCTACATCGAAGGATGCAAGGTTGTGGGTGTTGACTGTGAATGGAAACCCAATTACCAGAAAGGCAG CAAACCGAATCGGGTTTCTATCATGCAAATATCTTCAGAGGAAACGGCTTTTGTTCTCGACTTGATTAAGCTATCAGAAGATGTGCCTGATGCTCTAGAC AGCTGCCTTACTCGTATTTTGCAGTCTCCTGGAGTTCTGAAACTCGGTTACAACTTCAAGTGTGATATAAAGCAATTAGCAGGATCGTATGCAGAGCTCA ACTGTTTTAAGCAATACCAAATGTTGCTAGATATTCAGAACGTATTCAAGGAACGATGTGGCGGCTTGTCAGGACTTGCAGAGGTATCTTCGAGTTCGCA AATTGATTCGTTCTCCGAACATTGCTTTTAG
AA sequence Show only first row Show all	>Lus10031403 pacid=23155839 polypeptide=Lus10031403 locus=Lus10031403.g ID=Lus10031403.BGIv1.0 annot-version=v1.0 MGNIYGQANAVFTLVQEYVDRKLLKQAYDIIKKNDLKQEFPVVYLKCKESSLKKFAEKALWDVAEAKTHGDRQLLEYLVYLALEAGYTEKVDELCERYSL EGFRKLTAEPEISSTQHSRYLHLNELITNDVVWVDEADSLYDATSYIEGCKVVGVDCEWKPNYQKGSKPNRVSIMQISSEETAFVLDLIKLSEDVPDALD SCLTRILQSPGVLKLGYNFKCDIKQLAGSYAELNCFKQYQMLLDIQNVFKERCGGLSGLAEVSSSSQIDSFSEHCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56310			Polynucleotidyl transferase, r...		Lus10031403 [exp]	0	1
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	4.6	0.7991
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10029959 [exp]	8.9	0.7742
					Lus10027424 [exp]	13.3	0.6761
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10000540 [exp]	15.6	0.7787
AT3G14150			Aldolase-type TIM barrel famil...		Lus10013174 [exp]	15.7	0.7811
					Lus10031452 [exp]	18.7	0.7795
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036690 [exp]	25.5	0.7523
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10037673 [exp]	29.2	0.7709
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10031573 [exp]	29.7	0.7223
AT1G73350			unknown protein		Lus10026363 [exp]	32.1	0.7708

Compare expression of checked genes

Lus10031403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.