Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05725 71 / 7e-17 Protein of unknown function (DUF3511) (.1) AT2G47480 60 / 9e-13 Protein of unknown function (DUF3511) (.1) AT1G72720 55 / 7e-11 Protein of unknown function (DUF3511) (.1) AT3G62640 54 / 1e-10 Protein of unknown function (DUF3511) (.1) AT5G11970 53 / 3e-10 Protein of unknown function (DUF3511) (.1) AT2G19460 53 / 5e-10 Protein of unknown function (DUF3511) (.1) AT4G09890 48 / 2e-08 Protein of unknown function (DUF3511) (.1) AT3G13910 44 / 5e-07 Protein of unknown function (DUF3511) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010929 [exp] 181 / 9e-61 AT3G05725 71 / 3e-17 Protein of unknown function (DUF3511) (.1) Lus10027629 [exp] 57 / 1e-11 AT2G19460 110 / 2e-32 Protein of unknown function (DUF3511) (.1) Lus10011939 [exp] 57 / 2e-11 AT2G19460 109 / 6e-32 Protein of unknown function (DUF3511) (.1) Lus10017155 [exp] 57 / 2e-11 AT5G11970 93 / 1e-25 Protein of unknown function (DUF3511) (.1) Lus10021581 [exp] 57 / 3e-11 AT5G11970 97 / 4e-27 Protein of unknown function (DUF3511) (.1) Lus10008471 [exp] 54 / 1e-10 AT2G19460 95 / 1e-26 Protein of unknown function (DUF3511) (.1) Lus10006019 [exp] 54 / 2e-10 AT2G19460 88 / 9e-24 Protein of unknown function (DUF3511) (.1) Lus10033529 [exp] 52 / 6e-10 AT4G09890 70 / 2e-17 Protein of unknown function (DUF3511) (.1) Lus10020842 [exp] 49 / 3e-08 AT4G09890 69 / 2e-16 Protein of unknown function (DUF3511) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010600 [exp] 83 / 3e-22 AT2G47480 54 / 5e-11 Protein of unknown function (DUF3511) (.1) Potri.005G019900 [exp] 77 / 5e-20 AT3G05725 63 / 3e-14 Protein of unknown function (DUF3511) (.1) Potri.003G043600 [exp] 67 / 2e-15 AT5G11970 89 / 5e-24 Protein of unknown function (DUF3511) (.1) Potri.006G147700 [exp] 67 / 2e-15 AT2G19460 96 / 2e-26 Protein of unknown function (DUF3511) (.1) Potri.001G197700 [exp] 64 / 3e-14 AT2G19460 78 / 1e-19 Protein of unknown function (DUF3511) (.1) Potri.014G123600 [exp] 61 / 3e-13 AT2G47480 93 / 5e-26 Protein of unknown function (DUF3511) (.1) Potri.006G225900 [exp] 58 / 8e-12 AT5G11970 90 / 2e-24 Protein of unknown function (DUF3511) (.1) Potri.007G077500 [exp] 51 / 1e-09 AT4G09890 80 / 3e-21 Protein of unknown function (DUF3511) (.1) Potri.002G065200 [exp] 48 / 2e-08 AT4G09890 84 / 9e-23 Protein of unknown function (DUF3511) (.1) Potri.005G195800 [exp] 47 / 4e-08 AT4G09890 81 / 1e-21 Protein of unknown function (DUF3511) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12023 [flax] [poplar] DUF3511 Domain of unknown function (DUF3511)
Representative CDS sequence Show only first row Show all	>Lus10031405 pacid=23156013 polypeptide=Lus10031405 locus=Lus10031405.g ID=Lus10031405.BGIv1.0 annot-version=v1.0 ATGGGCGTTAGTTTTAACAAACGGTGCAGAGAAAGAGGAAGACGGTACACCGGACTAACAGATGACACATTGTCTCCGCCCCGGCATCGAATGAGGCTTC CACCGCCGCCGGGGCACTACAACCGGCAGCACCCGCATTCAGCGGTAGCCAAGAGGAACTCTGGCTGTTCGTTGAAGCTATGGTGGAACTCGCCGGACAC GAAGAGGAAGAAACGGGTGGCGAGGTATAAGCTCTACGCCGTGGAAGGGAAGGTGAAGTCGTCTTTGAAGAAGAGCTGCAAGTGGATCAAAAGAACTTGC TCGAGACTTGTCCATGGTTTTTAA
AA sequence Show only first row Show all	>Lus10031405 pacid=23156013 polypeptide=Lus10031405 locus=Lus10031405.g ID=Lus10031405.BGIv1.0 annot-version=v1.0 MGVSFNKRCRERGRRYTGLTDDTLSPPRHRMRLPPPPGHYNRQHPHSAVAKRNSGCSLKLWWNSPDTKRKKRVARYKLYAVEGKVKSSLKKSCKWIKRTC SRLVHGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05725			Protein of unknown function (D...		Lus10031405 [exp]	0	1
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	3.5	0.8070
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	4.5	0.7954
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	6.5	0.7360
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	7.2	0.7550
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10009292 [exp]	11.2	0.6851
AT4G19130			Replication factor-A protein 1...		Lus10034056 [exp]	11.2	0.7416
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	11.8	0.7505
					Lus10040545 [exp]	12.0	0.7357
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10021848 [exp]	14.5	0.7694
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10013551 [exp]	14.8	0.7290

Compare expression of checked genes

Lus10031405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.