Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05760 246 / 2e-83 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010928 [exp] 310 / 7e-109 AT3G05760 281 / 2e-97 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010300 [exp] 255 / 5e-87 AT3G05760 231 / 7e-78 C2H2 and C2HC zinc fingers superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF12171 [flax] [poplar] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
Representative CDS sequence Show only first row Show all	>Lus10031406 pacid=23156043 polypeptide=Lus10031406 locus=Lus10031406.g ID=Lus10031406.BGIv1.0 annot-version=v1.0 ATGGCTAATCCTCCCGGAGTCGACAACACGTTCAGGAAAAAGTTCGATCCAGAAGAGTACTTAGAACGAGCTCGTGAGCGAGAAAAGCAGGAGGCTGAAG GGAGATCAAAGTCTAAATCTAAAGGTCCTCCTGTGCAGAGGCAGCCATTAAAGCATAGAGATTATCATGTGGACCTTGAATCCCGGCTGGGGAAAACTCA GGTTGTTACACCGATTGCACCTCTAAGCCAGCAGGCTGGATACTTCTGTTCGGTATGCGAGTGTGTAGTAAAGGATTCCGCGAACTACTTGGATCACATC AATGGAAAGAAACATCAGAGAGCTTTAGGCATGTCTATGAGGGTCGAAAGGTCATCCCTTCAACAGGTCCAAGAACGATTCGAGATGCTCAAGAAACGTA AAGATCCCATCAGTTTCTCAGAACAAGATCTTGATGAACGACTCTTGAAGCGGCAGCAGGAGGAGGAGGAACATAAGCGACTCAAACGAGAACGAAAGAA GGAAAAAAAGGTTGGTGAGATAAATCCAAGAGAGAAGGCTGGAGAAGATCAAGAAGCTGATATCGACCCAGATGTTGCGGCTATGATGGGTTTCGGTGGT TTTGGTTCGTCCAAGAAGTAG
AA sequence Show only first row Show all	>Lus10031406 pacid=23156043 polypeptide=Lus10031406 locus=Lus10031406.g ID=Lus10031406.BGIv1.0 annot-version=v1.0 MANPPGVDNTFRKKFDPEEYLERAREREKQEAEGRSKSKSKGPPVQRQPLKHRDYHVDLESRLGKTQVVTPIAPLSQQAGYFCSVCECVVKDSANYLDHI NGKKHQRALGMSMRVERSSLQQVQERFEMLKKRKDPISFSEQDLDERLLKRQQEEEEHKRLKRERKKEKKVGEINPREKAGEDQEADIDPDVAAMMGFGG FGSSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05760	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10031406 [exp]	0	1
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	3.3	0.8784
AT4G30820			cyclin-dependent kinase-activa...		Lus10024924 [exp]	10.5	0.8131
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Lus10035851 [exp]	12.6	0.8394
AT5G26800			unknown protein		Lus10011180 [exp]	13.9	0.8509
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10037938 [exp]	19.2	0.8500
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	20.0	0.8399
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Lus10028804 [exp]	20.6	0.8320
AT1G67785			unknown protein		Lus10042077 [exp]	23.0	0.8245
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	24.7	0.8178
AT3G49100			Signal recognition particle, S...		Lus10024862 [exp]	27.1	0.8122

Compare expression of checked genes

Lus10031406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.